Browse Element(s) Details


Os.41794.1.S1_at

Description gb:AK121474.1
DB_XREF= gi:37991097
TID=Os.41794.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.41794 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0435H01.29 (P0435H01.29), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023148N13, full insert sequence.
FL= gb:AK121474.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5313010/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g53090Os.37745.1.S1_at11/111+30839129..30840475Pathogen-related protein, putative, expressed
LOC_Os01g53100OsAffx.25766.2.S1_x_at10/111+30843679..30844278Ubiquitin family protein, expressed
LOC_Os01g53100OsAffx.25766.2.S1_at10/111+30843679..30844278Ubiquitin family protein, expressed
LOC_Os01g53110Os.37745.1.S1_at2/111+30847448..30848413Pathogen-related protein, putative
LOC_Os01g53120OsAffx.11581.1.S1_at11/111+30851804..30852380hypothetical protein
LOC_Os01g53130Os.41794.1.S1_at10/111+30852233..30855907Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g53140Os.6679.1.S1_at10/111+30860457..30863593expressed protein
LOC_Os01g53140Os.8190.2.S1_x_at2/111+30860457..30863593expressed protein
LOC_Os01g53150Os.18863.1.S1_at11/111+30863984..30868719GTP-binding protein, putative, expressed
LOC_Os01g53150Os.52504.1.S1_at11/111+30863984..30868719GTP-binding protein, putative, expressed
LOC_Os01g53150Os.49481.1.S1_at1/111+30863984..30868719GTP-binding protein, putative, expressed
LOC_Os01g53160Os.55598.1.S1_at11/111+30869648..30870902uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os01g53170OsAffx.943.1.S1_at11/111+30878472..30880838retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.41794.1.S1_at--1113--4551Chr01:30855450..30855474 (25 bp)
GCGCCGAGGCCTGGTTCAGGATCAA
LOC_Os01g53130
Os.41794.1.S1_at--560--8051Chr01:30854421..30854440 (20 bp)
GGAGAACGCAGCCTTTTTGTTTCCG
LOC_Os01g53130
Os.41794.1.S1_at--588--7151NONE
GTCTCTACATACACCAGTTTTTGCA
NONE
Os.41794.1.S1_at--229--4751Chr01:30852510..30852534 (25 bp)
GCTGAGTCCTGGTCCTAACTGGAAT
LOC_Os01g53130
Os.41794.1.S1_at--847--2151Chr01:30852423..30852447 (25 bp)
ACAGCGTATATCTCTATTGGTTCGA
LOC_Os01g53130
Os.41794.1.S1_at--1033--3111Chr01:30852384..30852408 (25 bp)
AATTTCGTTGATTCGTATTCTGTGG
LOC_Os01g53130
Os.41794.1.S1_at--347--8051Chr01:30852361..30852385 (25 bp)
GGAGATCACTTTAATCCTGGAAGCT
LOC_Os01g53130
Os.41794.1.S1_at--1123--8511Chr01:30852344..30852368 (25 bp)
TGGAAGCTCGATTTCCATATCCAAT
LOC_Os01g53130
Os.41794.1.S1_at--557--6011Chr01:30852303..30852327 (25 bp)
GAGAGCAATCAACTACCATTTGTTT
LOC_Os01g53130
Os.41794.1.S1_at--496--6931Chr01:30852276..30852300 (25 bp)
GTAGTACAGTTTCATGTCGCCGTAA
LOC_Os01g53130
Os.41794.1.S1_at--604--7231Chr01:30852261..30852285 (25 bp)
GTCGCCGTAACACCTGCAATCAGAG
LOC_Os01g53130
Target Sequence 
GCGCCGAGGCCTGGTTCAGGATCAAGGGCGATAGGNNNNNNNNGNTNTNTNNNNNANNNGNNNNNNNCNNTNNNNNGNNN
NANGTGAAAAAATTCATGGAAGAATGGCATGGTCCAAGACTGGCAAACACACGAACTACAACGCAGAGGGAAAGTACTTG
TTGGAGAACGCAGCCTTTTTGTTTCCGCCCTGTTTCTTGTCTCTACATACACCAGTTTTTGCAGTGTTGAGCTGAGTCCT
GGTCCTAACTGGAATTAACTCAATTAAGCATTTCATTTACATCAGTACTACTAATACAGATTTGCTTTTTCAAAAGAACA
GCGTATATCTCTATTGGTTCGACTTCAACGGATAAGAATTTCGTTGATTCGTATTCTGTGGAGATCACTTTAATCCTGGA
AGCTCGATTTCCATATCCAATGGTGGTTGGATGGTATGAGAGCAATCAACTACCATTTGTTTTTGTAGTACAGTTTCATG
TCGCCGTAACACCTGCAATCAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.41794.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis