Browse Element(s) Details


Os.41946.1.S1_s_at

Description gb:CA762897
DB_XREF= gi:25806936
DB_XREF=BR060014B20H04.ab1
CLONE=BR060014B20H04.ab1
TID=Os.41946.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.41946 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative 8-amino-7-oxononanoate synthase (B1060H01.29), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g534506/11aminotransferase, classes I and II family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g53420Os.5225.1.S1_at11/111+31016698..31018300UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g53430Os.33722.1.S1_at11/111+31021784..31023538UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g53440OsAffx.11587.1.S1_at11/111+31035128..31035529hypothetical protein
LOC_Os01g53460Os.25227.2.S1_at11/111+31039021..31040692UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g53450Os.25227.1.S1_x_at11/111+31039261..31044535aminotransferase, classes I and II family protein, expressed
LOC_Os01g53450Os.41946.1.S1_at11/111+31039261..31044535aminotransferase, classes I and II family protein, expressed
LOC_Os01g53450Os.25227.1.S1_s_at11/111+31039261..31044535aminotransferase, classes I and II family protein, expressed
LOC_Os01g53450Os.41946.1.S1_s_at6/111+31039261..31044535aminotransferase, classes I and II family protein, expressed
LOC_Os01g53470Os.28576.1.S1_at11/111+31045778..31046800Harpin-induced protein 1 containing protein, expressed
LOC_Os01g53480NANA1+31047595..31050103retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g53500Os.32371.1.S1_at11/111+31057165..31058185Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g53500Os.32371.2.S1_x_at11/111+31057165..31058185Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g53520Os.4947.1.S1_at11/111+31065548..31067572reticulon family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009058biological_processbiosynthesis
GO:0030148biological_processsphingolipid biosynthesis
GO:0046512biological_processsphingosine biosynthesis
GO:0005783cellular_componentendoplasmic reticulum
GO:0016020cellular_componentmembrane
GO:0004758molecular_functionserine C-palmitoyltransferase activity
GO:0008483molecular_functiontransaminase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.41946.1.S1_s_at--971--2411Chr01:31044264..31044288 (25 bp)
AAAACTTTAAGCAAGTCCATCGGAG
LOC_Os01g53450
Os.41946.1.S1_s_at--674--2031Chr01:31044267..31044291 (25 bp)
ACTTTAAGCAAGTCCATCGGAGAAT
LOC_Os01g53450
Os.41946.1.S1_s_at--210--6431Chr01:31044338..31044362 (25 bp)
GATAAGTTGATTCTAGTTGACGCGA
LOC_Os01g53450
Os.41946.1.S1_s_at--580--6651Chr01:31044343..31044367 (25 bp)
GTTGATTCTAGTTGACGCGATTATT
LOC_Os01g53450
Os.41946.1.S1_s_at--182--9551Chr01:31044349..31044373 (25 bp)
TCTAGTTGACGCGATTATTTGCATA
LOC_Os01g53450
Os.41946.1.S1_s_at--805--5791NONE
GACGCGATTATTTGCATATATCCTT
NONE
Os.41946.1.S1_s_at--383--4631Chr01:31044359..31044484 (25 bp)
GCGATTATTTGCATATATCCTTTTA
LOC_Os01g53450
Os.41946.1.S1_s_at--1145--9731NONE
TAATTTATATGATCTCCGGATGCCC
NONE
Os.41946.1.S1_s_at--886--10351NONE
TTTATATGATCTCCGGATGCCCTAC
NONE
Os.41946.1.S1_s_at--1161--251NONE
ATATGATCTCCGGATGCCCTACAAG
NONE
Os.41946.1.S1_s_at--749--8831NONE
TGATCTCCGGATGCCCTACAAGTTG
NONE
Target Sequence 
AAAACTTTAAGCAAGTCCATCGGAGAATTAAGTTTCAATATCTGATGCCCTGCAAGTTGATATGAGGAGAAGGGGATAAG
TTGATTCTAGTTGACGCGATTATTTGCATATATCCTTTTATTTATGTTTGTATGATTGTATCNCCNCGATGTAAAACATA
ATTTATATGATCTCCGGATGCCCTACAAGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.41946.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis