Browse Element(s) Details


Os.420.1.S2_at

Description gb:AK106758.1
DB_XREF= gi:32991967
TID=Os.420.1
CNT=53
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.420 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) RTRXH2 mRNA for thioredoxin h, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-115-D09, full insert sequence.
FL= gb:AK059385.1 gb:AK106758.1 gb:AB053294.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4325211/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g43230OsAffx.15081.1.S1_at10/115+25070837..25074449papain-like cysteine peptidase XBCP3, putative, expressed
LOC_Os05g43240Os.25185.1.S1_at11/115+25075780..25080241Jacalin-like lectin domain containing protein, expressed
LOC_Os05g43252Os.420.1.S2_at11/115+25081106..25086087expressed protein
LOC_Os05g43252Os.420.1.S1_at11/115+25081106..25086087expressed protein
LOC_Os05g43264NANA5+25092528..25093185NA
LOC_Os05g43280Os.7504.2.S1_at11/115+25093445..25103502MATH domain containing protein, expressed
LOC_Os05g43280Os.7504.1.S2_x_at11/115+25093445..25103502MATH domain containing protein, expressed
LOC_Os05g43280OsAffx.15082.1.S1_x_at11/115+25093445..25103502MATH domain containing protein, expressed
LOC_Os05g43280Os.7504.1.S1_x_at11/115+25093445..25103502MATH domain containing protein, expressed
LOC_Os05g43290OsAffx.15083.1.S1_at11/115+25103589..25104529hypothetical protein
LOC_Os05g43300Os.15545.1.S1_at11/115+25105050..25109889H1flk, putative, expressed
LOC_Os05g43310Os.5215.1.S1_at11/115+25110262..25111505Photosystem II reaction centre W protein containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.420.1.S2_at--424--1851Chr05:25085492..25085516 (25 bp)
ACGAAGCTGTCGAACTACTGCGCCT
LOC_Os05g43252
Os.420.1.S2_at--722--3951Chr05:25085547..25085571 (25 bp)
CGGACCCGAGCTACAACGCGGAGCA
LOC_Os05g43252
Os.420.1.S2_at--417--1371Chr05:25085628..25085652 (25 bp)
AGAGCGCCGTGCTCCAGAGGCTGCA
LOC_Os05g43252
Os.420.1.S2_at--966--6051Chr05:25085789..25085813 (25 bp)
GAGTTCTGGGCGGAGTTCATCCTGT
LOC_Os05g43252
Os.420.1.S2_at--779--4491Chr05:25085821..25085845 (25 bp)
GCCGTCGGACAACGTGGACATCCAC
LOC_Os05g43252
Os.420.1.S2_at--977--8931Chr05:25085877..25085901 (25 bp)
TGACGCAGCTGTGGGCGCTGCTCTC
LOC_Os05g43252
Os.420.1.S2_at--470--4411Chr05:25085947..25085971 (25 bp)
GCCACCGACGGTGTGATCAGATTGA
LOC_Os05g43252
Os.420.1.S2_at--27--411Chr05:25085962..25085986 (25 bp)
ATCAGATTGATCGATGGTTATGTTC
LOC_Os05g43252
Os.420.1.S2_at--151--8811Chr05:25085982..25086006 (25 bp)
TGTTCGAGATCGTGCAAGCTAGATA
LOC_Os05g43252
Os.420.1.S2_at--318--3291Chr05:25086014..25086038 (25 bp)
CAAATTTAGTTGCTCCATCCATGAA
LOC_Os05g43252
Os.420.1.S2_at--824--6671Chr05:25086022..25086046 (25 bp)
GTTGCTCCATCCATGAATTCATTTT
LOC_Os05g43252
Target Sequence 
ACGAAGCTGTCGAACTACTGCGCCTACCTGGTCGCGTTCGTGCCGGAGATGCTGCCGGACCCGAGCTACAACGCGGAGCA
GATGTTCGACACGGCGGTGCAGCAGGCGAGGGACCACCTGGGCGGCTGCAGGACGGAGAGCGCCGTGCTCCAGAGGCTGC
AGGAGATCGAGGACGAGGAGCGGCGCGGCGCCGTGCGCGAGAGGGCGGGCAGCGCCACCGTCATCGAGAAGGCGGCGCTG
CTCGGCGGGCAGCTGAGGGCGGCCGTGGACGAGGCGCGGCGGTGGCAGGTGCTGGCCGAGTTCTGGGCGGAGTTCATCCT
GTTCCTCGCGCCGTCGGACAACGTGGACATCCACGCCGAGGTGCTCGGCGCCGGCGGCGAGTTCATGACGCAGCTGTGGG
CGCTGCTCTCCCACGCCGGCGTCCTGGAACGGCCGGCCGTCGCCGCGACGCCGTCGCCACCGACGGTGTGATCAGATTGA
TCGATGGTTATGTTCGAGATCGTGCAAGCTAGATAGGGGATGCAAATTTAGTTGCTCCATCCATGAATTCATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.420.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis