Browse Element(s) Details


Os.42170.1.S1_x_at

Description gb:NM_191126.1
DB_XREF= gi:34909335
GEN=OSJNBb0021A09.14
TID=Os.42170.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.42170 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBb0021A09.14 (OSJNBb0021A09.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) OSJNBb0021A09.14 (OSJNBb0021A09.14), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5363010/11Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g53570Os.32118.1.S1_x_at11/111+31090937..31093436Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os01g53570Os.32118.1.S1_at11/111+31090937..31093436Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os01g53570Os.32118.2.S1_x_at11/111+31090937..31093436Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os01g53580NANA1+31095323..310959493'-5' exonuclease family protein
LOC_Os01g53590OsAffx.21642.1.S1_s_at11/111+31097247..310998513'-5' exonuclease family protein
LOC_Os01g53600Os.53562.1.S1_s_at11/111+31101964..31106121Protein farnesyltransferase beta subunit, putative, expressed
LOC_Os01g53610Os.34170.1.S1_at11/111+31106241..31109574pentatricopeptide, putative, expressed
LOC_Os01g53620OsAffx.23776.1.S1_at11/111+31112951..31114867expressed protein
LOC_Os01g53620Os.9011.1.S1_at10/111+31112951..31114867expressed protein
LOC_Os01g53630Os.42170.1.S1_x_at10/111+31115825..31123367Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os01g53640Os.1986.1.S1_at11/111+31145840..31150093retrotransposon protein, putative, Ty3-gypsy subclass, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0008234molecular_functioncysteine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.42170.1.S1_x_at--510--5611Chr01:31117028..31117052 (25 bp)
GACAACCGTACATAATTCTGCCTAT
LOC_Os01g53630
Os.42170.1.S1_x_at--75--5211Chr01:31116774..31116798 (25 bp)
GAATCTGGGCCGATAATACTTCACT
LOC_Os01g53630
Os.42170.1.S1_x_at--214--331Chr01:31116759..31116783 (25 bp)
ATACTTCACTTGGACTCTCTAGGAC
LOC_Os01g53630
Os.42170.1.S1_x_at--862--10051Chr01:31116740..31116764 (25 bp)
TAGGACTCCATTCCAGTCGTGAAGT
LOC_Os01g53630
Os.42170.1.S1_x_at--361--6011Chr01:31116530..31116551 (22 bp)
GAGAGCTTCCTCATAGCAGAATGGC
LOC_Os01g53630
Os.42170.1.S1_x_at--1118--8811Chr01:31116492..31116516 (25 bp)
TGATTCTTCTTATACTATCCCCTTT
LOC_Os01g53630
Os.42170.1.S1_x_at--502--2831Chr01:31116179..31116267 (25 bp)
AAGTTCAGGTGCCAAGTCAGCGTAA
LOC_Os01g53630
Os.42170.1.S1_x_at--847--5431NONE
GAACCTTTGCATGTTTGGACGGAAA
NONE
Os.42170.1.S1_x_at--1017--2911Chr01:31115965..31115989 (25 bp)
AAGGAAACTTCTGGGCTGCGGGACA
LOC_Os01g53630
Os.42170.1.S1_x_at--1053--6291Chr01:31115896..31115920 (25 bp)
GATGATGAATCGTCGCAGTCCGAGT
LOC_Os01g53630
Os.42170.1.S1_x_at--289--1151Chr01:31115880..31115904 (25 bp)
AGTCCGAGTCACATTCTGATGATCA
LOC_Os01g53630
Target Sequence 
GACAACCGTACATAATTCTGCCTATTCATGGAGAGATGCACTGGAGCTTGATAATTATCTGCATGCCTGCAAAAGAAACA
GAATCTGGGCCGATAATACTTCACTTGGACTCTCTAGGACTCCATTCCAGTCGTGAAGTTTTTTATGTTATTGAGAGCTT
CCTCATAGCAGAATGGCAACATCTACAGAATGATTCTTCTTATACTATCCCCTTTTCAGGGAGAATATGGAATCATCTAT
CAAAAAATATAAACAAGGAAAAAGTTCAGGTGCCAAGTCAGCGTAATAAGTATGACTGTGGTATCTTTATGCTTCATTAC
ATTGAGAGGTTTATTCAAGAGGCACCAGAGAGGCTGACAAGAGAGAACCTTTGCATGTTTGGACGGAAATGGTTCGATCC
CAAGGAAACTTCTGGGCTGCGGGACAGAATTCGGGCACTAATGTTTGATGCATTTGAGAGTGCTCGGATGGATGATGAAT
CGTCGCAGTCCGAGTCACATTCTGATGATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.42170.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis