Browse Element(s) Details


Os.42475.1.S1_at

Description gb:AK121828.1
DB_XREF= gi:37991451
TID=Os.42475.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.42475 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0408C03.24 (P0408C03.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033099G20, full insert sequence.
FL= gb:AK119375.1 gb:AK121828.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6238011/11Fasciclin domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g62330NANA1+36400730..36402523retrotransposon protein, putative, unclassified
LOC_Os01g62340NANA1+36402921..36406125hypothetical protein
LOC_Os01g62350Os.6823.1.S1_at11/111+36409967..3641250360S ribosomal protein L36-2, putative, expressed
LOC_Os01g62360Os.36319.1.S1_at11/111+36416028..36418407hypothetical protein
LOC_Os01g62360Os.36319.1.S1_x_at10/111+36416028..36418407hypothetical protein
LOC_Os01g62360Os.36319.1.S2_at5/111+36416028..36418407hypothetical protein
LOC_Os01g62370Os.10956.1.S1_at11/111+36421747..36423712ENTH domain containing protein, expressed
LOC_Os01g62370Os.42477.1.S1_at11/111+36421747..36423712ENTH domain containing protein, expressed
LOC_Os01g62380Os.42475.1.S1_at11/111+36427400..36431110Fasciclin domain containing protein, expressed
LOC_Os01g62380Os.42475.1.S2_at11/111+36427400..36431110Fasciclin domain containing protein, expressed
LOC_Os01g62390Os.6301.1.S1_at11/111+36432257..36434864Growth regulator protein, putative, expressed
LOC_Os01g62400Os.55656.1.S1_at9/111+36444018..36445236hypothetical protein
LOC_Os01g62410Os.38177.1.S1_at11/111+36449635..36455336Myb-like DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
GO:0007155biological_processcell adhesion
GO:0009825biological_processmultidimensional cell growth
GO:0009897cellular_componentexternal side of plasma membrane
GO:0031225cellular_componentanchored to membrane
GO:0005515molecular_functionprotein binding
GO:0030247molecular_functionpolysaccharide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.42475.1.S1_at--401--10631Chr01:36430043..36430067 (25 bp)
TTCGACCAAAATCCCGTTGCGGTGT
LOC_Os01g62380
Os.42475.1.S1_at--585--7431Chr01:36430022..36430046 (25 bp)
GTGTTTGCCGTCTCGAAGGTTCTAC
LOC_Os01g62380
Os.42475.1.S1_at--615--5311Chr01:36430008..36430032 (25 bp)
GAAGGTTCTACTGCCCAAGGAAATG
LOC_Os01g62380
Os.42475.1.S1_at--558--6231Chr01:36429933..36429957 (25 bp)
GATGGCGCCAGATGCTGCCGAGAAC
LOC_Os01g62380
Os.42475.1.S1_at--298--7391Chr01:36429850..36429874 (25 bp)
GTGAGTCGTCATCAGCATTGTCAAC
LOC_Os01g62380
Os.42475.1.S1_at--938--291Chr01:36429800..36429824 (25 bp)
ATACGGTTGGTGCTCCTAAATCTGC
LOC_Os01g62380
Os.42475.1.S1_at--496--9831Chr01:36429784..36429808 (25 bp)
TAAATCTGCATCTCTTACTACTACC
LOC_Os01g62380
Os.42475.1.S1_at--425--8891Chr01:36429752..36429776 (25 bp)
TGAGATCCGGATGTTACCCATTGCT
LOC_Os01g62380
Os.42475.1.S1_at--1007--9091Chr01:36429731..36429755 (25 bp)
TGCTCGCTTCATTTTGCTCAATTTT
LOC_Os01g62380
Os.42475.1.S1_at--733--8791Chr01:36429706..36429730 (25 bp)
TGTTCTTCTGTTACTATTTTCCCCA
LOC_Os01g62380
Os.42475.1.S1_at--475--6011Chr01:36429570..36429594 (25 bp)
GAGAGACCTATGAAACCTACTTGTT
LOC_Os01g62380
Target Sequence 
TTCGACCAAAATCCCGTTGCGGTGTTTGCCGTCTCGAAGGTTCTACTGCCCAAGGAAATGTTCGGTCGGGGCGGTGCTGA
TAGCGACGTCATGGCGCCGCCGCCGGACGCGATGGCGCCAGATGCTGCCGAGAACGTGCGGACGCCGCCGACGAGACTGT
CGTCACCTCCAGCACTGCGGGGTGGCGCTGATAGTGAGTCGTCATCAGCATTGTCAACGGCAAGGGCTGTCAATTGGTGG
TGTATACGGTTGGTGCTCCTAAATCTGCATCTCTTACTACTACCTCTGGTATGAGATCCGGATGTTACCCATTGCTCGCT
TCATTTTGCTCAATTTTTGTTCTTCTGTTACTATTTTCCCCATTTTAGAATGTNTACTACGGGAATGTGATGGGTAGAGA
ATTTTATAGGGGCAAAAGCAGTAGCAATTTGTCTAGTTTCTTTATTAGTTTTAACGAAATAATATCATGTGTAGAGAGAC
CTATGAAACCTACTTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.42475.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis