Browse Element(s) Details


Os.42475.1.S2_at

Description gb:AK119375.1
DB_XREF= gi:37988998
TID=Os.42475.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.42475 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0408C03.24 (P0408C03.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-132-A06, full insert sequence.
FL= gb:AK119375.1 gb:AK121828.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6238011/11Fasciclin domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g62330NANA1+36400730..36402523retrotransposon protein, putative, unclassified
LOC_Os01g62340NANA1+36402921..36406125hypothetical protein
LOC_Os01g62350Os.6823.1.S1_at11/111+36409967..3641250360S ribosomal protein L36-2, putative, expressed
LOC_Os01g62360Os.36319.1.S1_at11/111+36416028..36418407hypothetical protein
LOC_Os01g62360Os.36319.1.S1_x_at10/111+36416028..36418407hypothetical protein
LOC_Os01g62360Os.36319.1.S2_at5/111+36416028..36418407hypothetical protein
LOC_Os01g62370Os.10956.1.S1_at11/111+36421747..36423712ENTH domain containing protein, expressed
LOC_Os01g62370Os.42477.1.S1_at11/111+36421747..36423712ENTH domain containing protein, expressed
LOC_Os01g62380Os.42475.1.S1_at11/111+36427400..36431110Fasciclin domain containing protein, expressed
LOC_Os01g62380Os.42475.1.S2_at11/111+36427400..36431110Fasciclin domain containing protein, expressed
LOC_Os01g62390Os.6301.1.S1_at11/111+36432257..36434864Growth regulator protein, putative, expressed
LOC_Os01g62400Os.55656.1.S1_at9/111+36444018..36445236hypothetical protein
LOC_Os01g62410Os.38177.1.S1_at11/111+36449635..36455336Myb-like DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
GO:0007155biological_processcell adhesion
GO:0009825biological_processmultidimensional cell growth
GO:0009897cellular_componentexternal side of plasma membrane
GO:0031225cellular_componentanchored to membrane
GO:0005515molecular_functionprotein binding
GO:0030247molecular_functionpolysaccharide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.42475.1.S2_at--93--5511Chr01:36427974..36427998 (25 bp)
GAACACCTAGGTTCTTGGGCAAGAT
LOC_Os01g62380
Os.42475.1.S2_at--423--9131Chr01:36427884..36427908 (25 bp)
TGCGGACTTGTCCATCTATAGCCTA
LOC_Os01g62380
Os.42475.1.S2_at--467--6731Chr01:36427751..36427775 (25 bp)
GTTCTTTGTTGTGCGCTGCAGCATG
LOC_Os01g62380
Os.42475.1.S2_at--211--9051Chr01:36427735..36427759 (25 bp)
TGCAGCATGCACTTGTCACCTATTG
LOC_Os01g62380
Os.42475.1.S2_at--550--8191Chr01:36427633..36427657 (25 bp)
GGAAGGTGCCCATCTATTTTAATAT
LOC_Os01g62380
Os.42475.1.S2_at--802--10771Chr01:36427598..36427622 (25 bp)
TTGATTTTTGTTCTCATGCTCCTTG
LOC_Os01g62380
Os.42475.1.S2_at--911--7171Chr01:36427574..36427598 (25 bp)
GTCTGAAGCTTCATCTTTTCTGTAA
LOC_Os01g62380
Os.42475.1.S2_at--375--6431Chr01:36427549..36427573 (25 bp)
GATCATTTAACCTATCTCTGTAACT
LOC_Os01g62380
Os.42475.1.S2_at--248--2831Chr01:36427486..36427510 (25 bp)
AAGTTCTTGTAACCTATTCCTGCAA
LOC_Os01g62380
Os.42475.1.S2_at--97--5491Chr01:36427442..36427466 (25 bp)
GAACTTCTTATACATACTCCATCAA
LOC_Os01g62380
Os.42475.1.S2_at--590--9811Chr01:36427404..36427428 (25 bp)
TAAAATTCCTGATTACCTGTACTTT
LOC_Os01g62380
Target Sequence 
GAACACCTAGGTTCTTGGGCAAGATAAGATTTAGCAATAATGCATATAGGTATGTTGGATTAGTGGCAAATTACTGGTTT
AGTTTATTGTTGCGGACTTGTCCATCTATAGCCTACAGTGAAATCAAGAGGCATTTGTATCTATGTTTTCAATTTCACAT
TCTGAAGTCTTGTCAGAAAAATACCGGCATATGCTGTAGAAAACAGTGTAACACCAATATCTTGTTCTTTGTTGTGCGCT
GCAGCATGCACTTGTCACCTATTGTGCTACAGTTTTTTTTTTTTTTTGGGGGGGGGGATGGGTACAGTCTTGAGACTGAA
TTTCAGCAATAATGAATAAATGGAAGGTGCCCATCTATTTTAATATTTTTTACCTTTTGATTTTTGTTCTCATGCTCCTT
GTCTGAAGCTTCATCTTTTCTGTAAGATCATTTAACCTATCTCTGTAACTTAAATCCTAGAGTAGGAATATGCAATGTTC
TTTTCTGTAAGTTCTTGTAACCTATTCCTGCAAATGAGCTTAATGGAGTTCTGAACTTCTTATACATACTCCATCAAAGG
ATTGTGCATCTAAAATTCCTGATTACCTGTACTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.42475.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis