Browse Element(s) Details


Os.4253.1.S1_s_at

Description gb:AK108910.1
DB_XREF= gi:32994119
TID=Os.4253.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4253 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-152-G07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-152-G07, full insert sequence.
FL= gb:AK108910.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0996011/11Protein kinase domain containing protein, expressed
LOC_Os04g107501/11phosphate:H+ symporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g09930Os.24972.1.S1_at11/112+5151783..5158882glycosyltransferase 10, putative, expressed
LOC_Os02g09940Os.4251.1.S1_at11/112+5166995..5167988AhpC/TSA family protein, expressed
LOC_Os02g09950Os.35344.18.S1_x_at9/112+5168444..5175359transposon protein, putative, Mutator sub-class
LOC_Os02g09950Os.35344.3.S1_x_at8/112+5168444..5175359transposon protein, putative, Mutator sub-class
LOC_Os02g09950OsAffx.22940.5.S1_at7/112+5168444..5175359transposon protein, putative, Mutator sub-class
LOC_Os02g09950OsAffx.22940.5.S1_x_at4/112+5168444..5175359transposon protein, putative, Mutator sub-class
LOC_Os02g09960OsAffx.24179.1.S1_x_at11/112+5179778..5182007Protein kinase domain containing protein, expressed
LOC_Os02g09960Os.4253.1.S1_s_at11/112+5179778..5182007Protein kinase domain containing protein, expressed
LOC_Os02g09970Os.55985.1.S1_at9/112+5183577..5184377expressed protein
LOC_Os02g09980Os.55519.1.S1_x_at1/112+5188958..5189776expressed protein
LOC_Os02g09990Os.55519.1.S1_x_at8/112+5194534..5195287expressed protein
LOC_Os02g09990Os.55519.1.S1_at6/112+5194534..5195287expressed protein
LOC_Os02g10000OsAffx.2561.1.S1_at10/112+5202091..5204588expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006817biological_processphosphate transport
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0005315molecular_functioninorganic phosphate transporter activity
GO:0005351molecular_functionsugar porter activity
GO:0015114molecular_functionphosphate transporter activity
GO:0015144molecular_functioncarbohydrate transporter activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4253.1.S1_s_at--1145--1711Chr02:5180186..5180210 (25 bp)
ACCATCCGCGACACCGGCGTCGAGA
LOC_Os02g09960
Os.4253.1.S1_s_at--493--9371Chr02:5180205..5180229 (25 bp)
TCGAGACCTACTTCATCATCGCCAA
LOC_Os02g09960
Os.4253.1.S1_s_at--407--2611Chr02:5180228..5180252 (25 bp)
AACCTCACCTACCAGGGCCTCTCGA
LOC_Os02g09960
Os.4253.1.S1_s_at--191--7291Chr02:5180254..5180278 (25 bp)
GTGCCAGGCTCTCATCGCGCAGAAT
LOC_Os02g09960
Os.4253.1.S1_s_at--486--4671Chr02:5180366..5180390 (25 bp)
GCGGGCGTCAAGCACATGGTCACCT
LOC_Os02g09960
Os.4253.1.S1_s_at--774--7571Chr02:5180368..5180392 (25 bp)
GGGCGTCAAGCACATGGTCACCTAC
LOC_Os02g09960
Os.4253.1.S1_s_at--1121--9711Chr02:5180373..5180397 (25 bp)
TCAAGCACATGGTCACCTACCTCGT
LOC_Os02g09960
Os.4253.1.S1_s_at--456--8293Chr04:5827853..5827882 (23 bp)
GGCTTGGCGGCGACTACCCGCTCGA
LOC_Os04g10750
Os.4253.1.S1_s_at--806--7651Chr02:5181772..5181796 (25 bp)
GGCGGTGTACGGCTCCACGGTGGAC
LOC_Os02g09960
Os.4253.1.S1_s_at--250--9431Chr02:5181806..5181830 (25 bp)
TCGGATCACGGCAACTCCGGGTCGT
LOC_Os02g09960
Os.4253.1.S1_s_at--508--2551Chr02:5181818..5181842 (25 bp)
AACTCCGGGTCGTCGCTGATTGGGA
LOC_Os02g09960
Target Sequence 
ACCATCCGCGACACCGGCGTCGAGACCTACTTCATCATCGCCAACCTCACCTACCAGGGCCTCTCGACGTGCCAGGCTCT
CATCGCGCAGAATCCCCTCCACGACAGCCGCGGCCTCGTCGCCGGCGACAACCTCACCGTCCCGCTCCGCTGCGCCTGCC
CCTCGCCGCCGCAGGCCGCCGCGGGCGTCAAGCACATGGTCACCTACCTCGTCACCTGGGGCGACACCGTCTCCGCGGCT
TGGCGGCGACTACCCGCTCGACCTGGCCATGGCCGTGGCGTCGCTGGCGGCGCGGTGCGTGGCGAGGCAGCCCGCCGCGC
GGCCGGCCATGGATGAGGTGTTCGTCTCGCTCGCGGCGGTGTACGGCTCCACGGTGGACTGGAACCCCTCGGATCACGGC
AACTCCGGGTCGTCGCTGATTGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4253.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis