Browse Element(s) Details


Os.429.1.S1_at

Description gb:AY551924.1
DB_XREF= gi:45385969
TID=Os.429.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.429 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) MADS-box protein RMADS219 mRNA, complete cds.
PROD=MADS-box protein RMADS219
FL= gb:AY551924.1 gb:L37526.1 gb:AK070894.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6603011/11MADS-box transcription factor 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65980NANA1+38624337..38624765retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g65986Os.49295.1.S1_at11/111+38626848..38632491Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed
LOC_Os01g65992OsAffx.23931.1.S1_x_at11/111+38632673..38633575expressed protein
LOC_Os01g65992Os.55676.1.S1_at11/111+38632673..38633575expressed protein
LOC_Os01g66000OsAffx.23932.1.S1_at11/111+38633605..38634552expressed protein
LOC_Os01g66010Os.50896.1.S1_at11/111+38637437..38640480amino acid carrier, putative, expressed
LOC_Os01g66020OsAffx.11750.1.S1_at11/111+38645909..38648075Protein kinase domain containing protein, expressed
LOC_Os01g66030Os.429.1.S1_at11/111+38648187..38650919MADS-box transcription factor 2, putative, expressed
LOC_Os01g66030OsAffx.27979.1.S1_x_at1/111+38648187..38650919MADS-box transcription factor 2, putative, expressed
LOC_Os01g66040Os.46331.1.S1_s_at11/111+38651379..38652432receptor kinase, putative
LOC_Os01g66040OsAffx.11751.1.S1_at11/111+38651379..38652432receptor kinase, putative
LOC_Os01g66050Os.37409.1.S1_at11/111+38656028..38659444wound-responsive family protein, putative, expressed
LOC_Os01g66060OsAffx.11752.1.S1_at10/111+38663066..38664461hypothetical protein
LOC_Os01g66070OsAffx.23933.1.S1_at11/111+38671259..38671786PHD-finger family protein
LOC_Os01g66080OsAffx.22461.2.S1_x_at8/111+38673560..38676645retrotransposon protein, putative, unclassified
LOC_Os01g66080OsAffx.22461.3.S1_x_at5/111+38673560..38676645retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0001708biological_processcell fate specification
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0008360biological_processregulation of cell shape
GO:0009908biological_processflower development
GO:0009933biological_processmeristem organization
GO:0010023biological_processproanthocyanidin biosynthesis
GO:0010093biological_processspecification of floral organ identity
GO:0045941biological_processpositive regulation of transcription
GO:0048481biological_processovule development
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.429.1.S1_at--981--6411Chr01:38649756..38649780 (25 bp)
GATCTAAACTCTCTGCAGCCCAAAG
LOC_Os01g66030
Os.429.1.S1_at--913--1591Chr01:38649386..38649405 (20 bp)
AGCTGCTGGCTTTTAAACTGCACCA
LOC_Os01g66030
Os.429.1.S1_at--55--10771Chr01:38648615..38648639 (25 bp)
TTGAGCTTGGGTACCATCCAGACAG
LOC_Os01g66030
Os.429.1.S1_at--170--3151Chr01:38648523..38648547 (25 bp)
AATTAAGCTGCTAGGTTGCCCCGCC
LOC_Os01g66030
Os.429.1.S1_at--829--2051Chr01:38648498..38648522 (25 bp)
ACTTCGATCAGTTATCTCATCCACT
LOC_Os01g66030
Os.429.1.S1_at--293--1131Chr01:38648448..38648472 (25 bp)
AGTGCATTGTCAACTGTATCCCTGT
LOC_Os01g66030
Os.429.1.S1_at--132--551Chr01:38648431..38648455 (25 bp)
ATCCCTGTTTTCATGTCTGTTTCGA
LOC_Os01g66030
Os.429.1.S1_at--99--791Chr01:38648386..38648410 (25 bp)
ATGTGAGTTGCTTTGTGTGCCAATA
LOC_Os01g66030
Os.429.1.S1_at--212--7471Chr01:38648372..38648396 (25 bp)
GTGTGCCAATATATAGTCTGTCTCT
LOC_Os01g66030
Os.429.1.S1_at--1071--7171Chr01:38648357..38648381 (25 bp)
GTCTGTCTCTAGTACAAGCTCTGTG
LOC_Os01g66030
Os.429.1.S1_at--763--111Chr01:38648326..38648350 (25 bp)
ATTCTGCCTCGCTGTAGATAGCACC
LOC_Os01g66030
Target Sequence 
GATCTAAACTCTCTGCAGCCCAAAGAGCTCATCATGATTGAGGAGGCACTTGACAATGGGATAGTGAACGTGAATGATAA
ACTGATGGACCACTGGGAAAGGCACGTGAGAACTGATAAGATGCTGGAAGACGAGAACAAGCTGCTGGCTTTTAAACTGC
ACCAGCAAGATATAGCGCTGAGCGGGAGCATGAGGGATCTTGAGCTTGGGTACCATCCAGACAGGGACTTTGCGGCCCAG
ATGCCGATCACCTTCCGCGTGCAGCCCAGCCACCCCAACCTGCAGGAGAACAATTAAGCTGCTAGGTTGCCCCGCCACTT
CGATCAGTTATCTCATCCACTGATCCACCACTGGATTGAATGTCCTAGTGCATTGTCAACTGTATCCCTGTTTTCATGTC
TGTTTCGATGAACTATTGAGCATGTCATATGTGAGTTGCTTTGTGTGCCAATATATAGTCTGTCTCTAGTACAAGCTCTG
TGCTTGCCATTCTGCCTCGCTGTAGATAGCACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.429.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis