Browse Element(s) Details


Os.42977.1.S1_at

Description gb:AK122054.1
DB_XREF= gi:37991700
TID=Os.42977.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.42977 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) similar to root cap protein (OJ1656_A11.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033114J03, full insert sequence.
FL= gb:AK122054.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7372011/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73670Os.8761.3.S1_x_at11/111+43011790..43016248expressed protein
LOC_Os01g73670Os.8761.2.S1_at11/111+43011790..43016248expressed protein
LOC_Os01g73670Os.8761.1.S1_s_at10/111+43011790..43016248expressed protein
LOC_Os01g73680Os.27288.2.S1_x_at11/111+43016763..43022294Aspartyl aminopeptidase, putative, expressed
LOC_Os01g73680Os.27288.2.S1_at11/111+43016763..43022294Aspartyl aminopeptidase, putative, expressed
LOC_Os01g73680Os.27288.1.S1_at11/111+43016763..43022294Aspartyl aminopeptidase, putative, expressed
LOC_Os01g73680OsAffx.13151.1.S1_x_at9/111+43016763..43022294Aspartyl aminopeptidase, putative, expressed
LOC_Os01g73680OsAffx.13151.2.S1_at1/111+43016763..43022294Aspartyl aminopeptidase, putative, expressed
LOC_Os01g73690Os.42980.1.S1_at11/111+43022310..43025907pentatricopeptide, putative, expressed
LOC_Os01g73690Os.26995.1.S1_at1/111+43022310..43025907pentatricopeptide, putative, expressed
LOC_Os01g73700Os.42977.2.S1_x_at2/111+43027029..43028099transposon protein, putative, unclassified
LOC_Os01g73710Os.42977.2.S1_x_at11/111+43031130..43032223transposon protein, putative, unclassified
LOC_Os01g73720Os.42977.1.S1_at11/111+43033372..43034829transposon protein, putative, unclassified, expressed
LOC_Os01g73720Os.42977.2.S1_x_at4/111+43033372..43034829transposon protein, putative, unclassified, expressed
LOC_Os01g73730Os.42975.1.S1_x_at8/111+43037666..43038849Root cap family protein, expressed
LOC_Os01g73730Os.42975.1.S1_at5/111+43037666..43038849Root cap family protein, expressed
LOC_Os01g73740OsAffx.27387.1.S1_at5/111+43040151..43040659lipase class 3 family protein, putative
LOC_Os01g73750OsAffx.11843.1.S1_at11/111+43042572..43048410Leucine Rich Repeat family protein, expressed
LOC_Os01g73760Os.8794.3.S1_x_at11/111+43050362..43053433tRNA delta-isopentenylpyrophosphate transferase family protein, expressed
LOC_Os01g73770Os.40428.1.S1_at11/111+43054274..43055187CRT/DRE binding factor 1, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.42977.1.S1_at--140--9631Chr01:43034510..43034534 (25 bp)
TCATGGGCGGCGCACCAAGCTACGT
LOC_Os01g73720
Os.42977.1.S1_at--27--3791Chr01:43034606..43034630 (25 bp)
CTGCCAGGGCCAGTTAAATTTGCTT
LOC_Os01g73720
Os.42977.1.S1_at--530--8431Chr01:43034613..43034637 (25 bp)
GGCCAGTTAAATTTGCTTGTATGCT
LOC_Os01g73720
Os.42977.1.S1_at--165--6911Chr01:43034631..43034655 (25 bp)
GTATGCTTCAAGCTTGATCGTTGAC
LOC_Os01g73720
Os.42977.1.S1_at--987--6391Chr01:43034646..43034670 (25 bp)
GATCGTTGACAGCTCTTATCGTGTA
LOC_Os01g73720
Os.42977.1.S1_at--720--1531Chr01:43034656..43034680 (25 bp)
AGCTCTTATCGTGTACCCAATCAAG
LOC_Os01g73720
Os.42977.1.S1_at--58--491Chr01:43034663..43034687 (25 bp)
ATCGTGTACCCAATCAAGCATTAAT
LOC_Os01g73720
Os.42977.1.S1_at--144--4951Chr01:43034680..43034704 (25 bp)
GCATTAATAGAGCTAGACACTGGAA
LOC_Os01g73720
Os.42977.1.S1_at--804--6131Chr01:43034723..43034747 (25 bp)
GAGGGAAACATACCAGTCATCAATC
LOC_Os01g73720
Os.42977.1.S1_at--842--3051Chr01:43034761..43034785 (25 bp)
AATCATTTGATATTCGCACCGTCTC
LOC_Os01g73720
Os.42977.1.S1_at--1005--7152Chr01:43034781..43034805 (25 bp)
GTCTCGTGCCGGTTTGTTAATGTTA
LOC_Os01g73720
Target Sequence 
TCATGGGCGGCGCACCAAGCTACGTCGCCTCCGACATCTTCTCCGCCGACTGCGCCGTCGCCAGGTTCGGCCACCGCGCC
GGCATCACCATGGTCACTGCCAGGGCCAGTTAAATTTGCTTGTATGCTTCAAGCTTGATCGTTGACAGCTCTTATCGTGT
ACCCAATCAAGCATTAATAGAGCTAGACACTGGAATAAGTTTATTTTCAGGTTGAGGGAAACATACCAGTCATCAATCAA
TATAGGACTCAAATCATTTGATATTCGCACCGTCTCGTGCCGGTTTGTTAATGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.42977.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis