Browse Element(s) Details


Os.42977.2.S1_x_at

Description gb:NM_189425.1
DB_XREF= gi:34905933
GEN=OJ1656_A11.8
TID=Os.42977.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.42977 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) similar to root cap protein (OJ1656_A11.8), mRNA.
PROD=similar to root cap protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7371011/11transposon protein, putative, unclassified
LOC_Os01g737204/11transposon protein, putative, unclassified, expressed
LOC_Os01g737002/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73662Os.32551.1.S1_at11/111+43006089..43007394expressed protein
LOC_Os01g73670Os.8761.3.S1_x_at11/111+43011790..43016248expressed protein
LOC_Os01g73670Os.8761.2.S1_at11/111+43011790..43016248expressed protein
LOC_Os01g73670Os.8761.1.S1_s_at10/111+43011790..43016248expressed protein
LOC_Os01g73680Os.27288.2.S1_x_at11/111+43016763..43022294Aspartyl aminopeptidase, putative, expressed
LOC_Os01g73680Os.27288.2.S1_at11/111+43016763..43022294Aspartyl aminopeptidase, putative, expressed
LOC_Os01g73680Os.27288.1.S1_at11/111+43016763..43022294Aspartyl aminopeptidase, putative, expressed
LOC_Os01g73680OsAffx.13151.1.S1_x_at9/111+43016763..43022294Aspartyl aminopeptidase, putative, expressed
LOC_Os01g73680OsAffx.13151.2.S1_at1/111+43016763..43022294Aspartyl aminopeptidase, putative, expressed
LOC_Os01g73690Os.42980.1.S1_at11/111+43022310..43025907pentatricopeptide, putative, expressed
LOC_Os01g73690Os.26995.1.S1_at1/111+43022310..43025907pentatricopeptide, putative, expressed
LOC_Os01g73700Os.42977.2.S1_x_at2/111+43027029..43028099transposon protein, putative, unclassified
LOC_Os01g73710Os.42977.2.S1_x_at11/111+43031130..43032223transposon protein, putative, unclassified
LOC_Os01g73720Os.42977.1.S1_at11/111+43033372..43034829transposon protein, putative, unclassified, expressed
LOC_Os01g73720Os.42977.2.S1_x_at4/111+43033372..43034829transposon protein, putative, unclassified, expressed
LOC_Os01g73730Os.42975.1.S1_x_at8/111+43037666..43038849Root cap family protein, expressed
LOC_Os01g73730Os.42975.1.S1_at5/111+43037666..43038849Root cap family protein, expressed
LOC_Os01g73740OsAffx.27387.1.S1_at5/111+43040151..43040659lipase class 3 family protein, putative
LOC_Os01g73750OsAffx.11843.1.S1_at11/111+43042572..43048410Leucine Rich Repeat family protein, expressed
LOC_Os01g73760Os.8794.3.S1_x_at11/111+43050362..43053433tRNA delta-isopentenylpyrophosphate transferase family protein, expressed
LOC_Os01g73770Os.40428.1.S1_at11/111+43054274..43055187CRT/DRE binding factor 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.42977.2.S1_x_at--358--4331Chr01:43031668..43031692 (25 bp)
CCATGAGCCGTGACTTCACCTGGAT
LOC_Os01g73710
Os.42977.2.S1_x_at--409--9791Chr01:43031606..43031630 (25 bp)
TACATCGGTGCCCTTAAGACCGCCA
LOC_Os01g73710
Os.42977.2.S1_x_at--903--7291Chr01:43031599..43031623 (25 bp)
GTGCCCTTAAGACCGCCAAGTGGAA
LOC_Os01g73710
Os.42977.2.S1_x_at--11--4391Chr01:43031584..43031608 (25 bp)
CCAAGTGGAACAGCGACGTCGACCG
LOC_Os01g73710
Os.42977.2.S1_x_at--1052--4331Chr01:43031455..43031479 (25 bp)
CCACCAACGGCGTGAGGGTGCAGCT
LOC_Os01g73710
Os.42977.2.S1_x_at--918--4472Chr01:43034299..43034323 (25 bp)
GCCGGCGTGTTCGACATCATGGCCA
LOC_Os01g73720
Os.42977.2.S1_x_at--28--3573Chr01:43034313..43034337 (25 bp)
CATCATGGCCAACGTGGTGCCCATC
LOC_Os01g73720
Os.42977.2.S1_x_at--180--951Chr01:43031383..43031407 (25 bp)
AGGACTCCCGCATCCACAACTATGG
LOC_Os01g73710
Os.42977.2.S1_x_at--128--4913Chr01:43034408..43034432 (25 bp)
GCTTCAAGTTCTACGACCTCTCCGA
LOC_Os01g73720
Os.42977.2.S1_x_at--1018--5692Chr01:43034470..43034494 (25 bp)
GACTACGTCAACAAGCTCAGCGTCA
LOC_Os01g73720
Os.42977.2.S1_x_at--882--4351Chr01:43031230..43031254 (25 bp)
CCAGCATGCCGGTCATGGACGGCGC
LOC_Os01g73710
Target Sequence 
CCATGAGCCGTGACTTCACCTGGATCCAGGCCCTCGGCATCCGCTTCGCCGACCACCGCCTCTACATCGGTGCCCTTAAG
ACCGCCAAGTGGAACAGCGACGTCGACCGCCTCGAGCTCGCCTTCGACGGCGCGCCCGTCGACGTCCCAGCCGAGCTCGG
CGCGCGCTGGGAGTCCGCCGCCGTTCCAGGCCTCACCGTCACCAGGACCGCCGCCACCAACGGCGTGAGGGTGCAGCTCG
CCGGCGTGTTCGACATCATGGCCAACGTGGTGCCCATCACCGAGCAGGACTCCCGCATCCACAACTATGGCGTCACCGAG
GAGGACAGCCTCGCTCACCTCGACATCGGCTTCAAGTTCTACGACCTCTCCGACGACGTCCACGGCGTGCTCGGCCAGAC
CTACCGCTCCGACTACGTCAACAAGCTCAGCGTCAGCGCCAGCATGCCGGTCATGGACGGCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.42977.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis