Browse Element(s) Details


Os.4299.1.S1_at

Description gb:AK105360.1
DB_XREF= gi:32990569
TID=Os.4299.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.4299 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-119-D02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-119-D02, full insert sequence.
FL= gb:AK105360.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0400011/11Peptidyl-prolyl cis-trans isomerase-like 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g03970Os.4294.1.S1_a_at11/116+1604743..1611389Leucine Rich Repeat family protein, expressed
LOC_Os06g03980Os.24969.1.A1_at11/116+1612665..1619184expressed protein
LOC_Os06g03980OsAffx.1574.1.S1_at1/116+1612665..1619184expressed protein
LOC_Os06g03980Os.50299.1.S1_at1/116+1612665..1619184expressed protein
LOC_Os06g03990Os.16220.1.A1_at11/116+1628796..1632617aminotransferase ACS12, putative, expressed
LOC_Os06g04000Os.4299.1.S1_at11/116+1634099..1635030Peptidyl-prolyl cis-trans isomerase-like 3, putative, expressed
LOC_Os06g04010Os.10575.1.S1_at11/116+1635529..1639861GAGA binding protein-like family protein, expressed
LOC_Os06g04020Os.12784.1.S1_at10/116+1641583..1642800linker histone H1 and H5 family protein, expressed
LOC_Os06g04020Os.49642.1.S1_x_at4/116+1641583..1642800linker histone H1 and H5 family protein, expressed
LOC_Os06g04030Os.47392.1.A1_x_at10/116+1644415..1645324Histone H3, putative, expressed
LOC_Os06g04040Os.27000.1.S1_s_at11/116+1647596..1653301Guanine nucleotide-binding protein beta subunit-like protein 1, putative, expressed
LOC_Os06g04040Os.27000.2.S1_x_at11/116+1647596..1653301Guanine nucleotide-binding protein beta subunit-like protein 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4299.1.S1_at--865--1871Chr06:1634486..1634510 (25 bp)
ACGAGTTCAGGGAGTCGCTCAAGCA
LOC_Os06g04000
Os.4299.1.S1_at--1083--2011Chr06:1634609..1634633 (25 bp)
ACTACACCGTGTTCGCCAAGGTCAT
LOC_Os06g04000
Os.4299.1.S1_at--108--1051Chr06:1634645..1634669 (25 bp)
AGGTGCTCGACCTCATGGAGAAGGC
LOC_Os06g04000
Os.4299.1.S1_at--936--7511Chr06:1634807..1634831 (25 bp)
GTGGATGTGTTGTGTTCTGCTGCTA
LOC_Os06g04000
Os.4299.1.S1_at--426--9491Chr06:1634822..1634846 (25 bp)
TCTGCTGCTATCTGAATCTTTGTTG
LOC_Os06g04000
Os.4299.1.S1_at--477--1971Chr06:1634863..1634887 (25 bp)
ACTGAGTCTGTAACTGATATCCCAA
LOC_Os06g04000
Os.4299.1.S1_at--764--10871Chr06:1634895..1634919 (25 bp)
TTGGCTTCACGATTGATGCATCTGC
LOC_Os06g04000
Os.4299.1.S1_at--234--4971Chr06:1634912..1634936 (25 bp)
GCATCTGCAGACTTGGGTTTTGTGA
LOC_Os06g04000
Os.4299.1.S1_at--524--7431Chr06:1634939..1634963 (25 bp)
GTGTTTTCATGTTTCAACTGGCTGT
LOC_Os06g04000
Os.4299.1.S1_at--227--8351Chr06:1634958..1634982 (25 bp)
GGCTGTGTGATCTATGGCTAAGTAC
LOC_Os06g04000
Os.4299.1.S1_at--124--2011Chr06:1634981..1635005 (25 bp)
ACATCAATTAAGCTACTACTCCCTC
LOC_Os06g04000
Target Sequence 
ACGAGTTCAGGGAGTCGCTCAAGCACAACGCCCGCGGGGTGATGTCGATGGCGAACAGCGGGCCCAACACCAACGGGAGC
CAGTTCTTCATCACCTACGCCAAGCAGCCTCACCTCAACGGCCACTACACCGTGTTCGCCAAGGTCATCCATGGATTCGA
GGTGCTCGACCTCATGGAGAAGGCGCAGACGGGGCCCGGCGACCGCCCCCTCGCCGAGATCAGGCTCAACCGCGTCACCA
TCCACGCCAACCCTCTCGCCAACTAATCCTATCTACTCCATCTAGTTTAAAATCTTTGGAATTCTGATTGCTTTTTTCTG
TGTGGATGTGTTGTGTTCTGCTGCTATCTGAATCTTTGTTGCAAGAACACCGTACAAACTGAGTCTGTAACTGATATCCC
AAAAAGTGTTTGGCTTCACGATTGATGCATCTGCAGACTTGGGTTTTGTGATTGTGTTTTCATGTTTCAACTGGCTGTGT
GATCTATGGCTAAGTACATCAATTAAGCTACTACTCCCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4299.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis