Browse Element(s) Details


Os.43072.1.S1_at

Description gb:NM_189251.1
DB_XREF= gi:34905585
GEN=OJ1460_H08.12
TID=Os.43072.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.43072 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains ESTs C72693(E2071),AU101165(E2071)~unknown protein (OJ1460_H08.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) contains ESTs C72693(E2071),AU101165(E2071)~unknown protein (OJ1460_H08.12), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2961011/11hypothetical protein
LOC_Os12g218602/11expressed protein
LOC_Os02g579202/11Cation transporter/ATPase, N-terminus family protein, expressed
LOC_Os02g209802/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g29560NANA1+16892399..16898286retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29570NANA1+16899062..16899709hypothetical protein
LOC_Os01g29580NANA1+16902613..16905757retrotransposon protein, putative, unclassified
LOC_Os01g29590NANA1+16906517..16911802retrotransposon protein, putative, unclassified
LOC_Os01g29600OsAffx.30618.1.S1_at10/111+16915402..16916028hypothetical protein
LOC_Os01g29610Os.43072.1.S1_at11/111+16917384..16924325hypothetical protein
LOC_Os01g29610Os.43072.1.S1_x_at11/111+16917384..16924325hypothetical protein
LOC_Os01g29610Os.19410.5.S1_at6/111+16917384..16924325hypothetical protein
LOC_Os01g29610Os.17455.1.S1_at6/111+16917384..16924325hypothetical protein
LOC_Os01g29610Os.19410.3.S1_x_at5/111+16917384..16924325hypothetical protein
LOC_Os01g29610Os.19410.3.S1_at4/111+16917384..16924325hypothetical protein
LOC_Os01g29610Os.19410.2.S1_at2/111+16917384..16924325hypothetical protein
LOC_Os01g29610Os.19410.4.A1_at1/111+16917384..16924325hypothetical protein
LOC_Os01g29610Os.12010.1.S1_x_at1/111+16917384..16924325hypothetical protein
LOC_Os01g29610OsAffx.3097.1.S1_x_at1/111+16917384..16924325hypothetical protein
LOC_Os01g29620OsAffx.19542.3.S1_x_at3/111+16928784..16932692retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g29640OsAffx.23450.1.S1_at8/111+16939592..16940065hypothetical protein
LOC_Os01g29650NANA1+16943797..16946112retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g29660OsAffx.22947.1.S1_x_at9/111+16948266..16949495retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29660OsAffx.22947.3.S1_x_at6/111+16948266..16949495retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29660OsAffx.22947.2.S1_x_at5/111+16948266..16949495retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0009935biological_processnutrient import
GO:0015992biological_processproton transport
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0005515molecular_functionprotein binding
GO:0008553molecular_functionhydrogen-exporting ATPase activity, phosphorylative mechanism
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.43072.1.S1_at--1153--2451Chr01:16917936..16918405 (25 bp)
AACACAGAGGACCAGAGGTTTCAGT
LOC_Os01g29610
Os.43072.1.S1_at--163--1332Chr04:4738337..4738807 (25 bp)
AGAGGACCAGAGGTTTCAGTCAATT
NONE
Os.43072.1.S1_at--25--1736Chr12:12304888..12304910 (23 bp)
ACCAGAGGTTTCAGTCAATTGCAAA
LOC_Os12g21860
Os.43072.1.S1_at--712--6156Chr12:12304890..12304914 (25 bp)
GAGGTTTCAGTCAATTGCAAATAAT
LOC_Os12g21860
Os.43072.1.S1_at--34--3093Chr04:4738811..4738835 (25 bp)
AATAATATGAGATTGGTTGACTTAA
NONE
Os.43072.1.S1_at--719--6533Chr04:4738821..4738845 (25 bp)
GATTGGTTGACTTAAAATTGAGGAT
NONE
Os.43072.1.S1_at--470--6172Chr04:4738840..4738911 (25 bp)
GAGGATGGTGTGGTTTGACACCTTT
NONE
Os.43072.1.S1_at--660--5972Chr01:16919674..16919698 (25 bp)
GAGAAAATATCTAAGGCCATGTTTG
LOC_Os01g29610
Os.43072.1.S1_at--764--452Chr01:16919682..16919706 (25 bp)
ATCTAAGGCCATGTTTGGTTTCTCA
LOC_Os01g29610
Os.43072.1.S1_at--358--9772Chr01:16919685..16919709 (25 bp)
TAAGGCCATGTTTGGTTTCTCAGGA
LOC_Os01g29610
Os.43072.1.S1_at--1121--4732Chr04:4740173..4740196 (24 bp)
GCTGTATTGATCAATATATTCAGGC
NONE
Target Sequence 
AACACAGAGGACCAGAGGTTTCAGTCAATTGCAAATAATATGAGATTGGTTGACTTAAAATTGAGGATGGTGTGGTTTGA
CACCTTTGGATTGCATACCAGAATTTTCCATGTTCTTCAGCTCTCAATAATTCATCTTCAGAGGAGAAAGGGAAGTGAGG
AAAATTTGAGAAAATATCTAAGGCCATGTTTGGTTTCTCAGGAGTCCAGGAGTTGGAGCCATGCAAACATGCATCATGCT
AATGTCGTCCTGAGCTTCCAGATTAGGCCCTGCTGTATTGATCAATATATTCAGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.43072.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis