Browse Element(s) Details


Os.4329.1.S1_at

Description gb:CB644543
DB_XREF= gi:29639534
DB_XREF=OSJNEb05M21.r
CLONE=OSJNEb05M21
TID=Os.4329.1
CNT=127
FEA=FLmRNA
TIER=Stack
STK=7
UG=Os.4329 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013118G18, full insert sequence
FL= gb:AK059014.1 gb:AK067755.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0372011/11Glyceraldehyde-3-phosphate dehydrogenase B, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g03680OsAffx.30403.1.S1_at11/113+1610499..1616535major facilitator superfamily protein, expressed
LOC_Os03g03680OsAffx.30403.1.S1_s_at11/113+1610499..1616535major facilitator superfamily protein, expressed
LOC_Os03g03690Os.53684.1.A1_at10/113+1619997..1623371Phospho-ethanolamine N-methyltransferase family protein, expressed
LOC_Os03g03690OsAffx.12724.1.S1_at10/113+1619997..1623371Phospho-ethanolamine N-methyltransferase family protein, expressed
LOC_Os03g03690Os.10405.1.S1_at1/113+1619997..1623371Phospho-ethanolamine N-methyltransferase family protein, expressed
LOC_Os03g03700Os.4327.1.S1_at11/113+1623489..1627107MLO protein homolog 1, putative, expressed
LOC_Os03g03710Os.24766.1.A1_s_at11/113+1631539..1639785RNB-like protein, expressed
LOC_Os03g03710Os.24766.1.A1_at11/113+1631539..1639785RNB-like protein, expressed
LOC_Os03g03710OsAffx.3125.1.S1_at10/113+1631539..1639785RNB-like protein, expressed
LOC_Os03g03720Os.4329.1.S1_at11/113+1640515..1643917Glyceraldehyde-3-phosphate dehydrogenase B, chloroplast precursor, putative, expressed
LOC_Os03g03720Os.10732.1.S1_s_at1/113+1640515..1643917Glyceraldehyde-3-phosphate dehydrogenase B, chloroplast precursor, putative, expressed
LOC_Os03g03730OsAffx.24955.1.S1_s_at11/113+1645808..1647611regulatory protein, putative, expressed
LOC_Os03g03740NANA3+1648147..1648488retrotransposon protein, putative, unclassified
LOC_Os03g03750OsAffx.12725.1.S1_at8/113+1649370..1649778hypothetical protein
LOC_Os03g03760OsAffx.12726.1.S1_at11/113+1651176..1656154myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os03g03770Os.4335.1.S1_at10/113+1663864..1667883NADH-ubiquinone oxidoreductase B18 subunit family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006096biological_processglycolysis
GO:0009416biological_processresponse to light stimulus
GO:0009744biological_processresponse to sucrose stimulus
GO:0009507cellular_componentchloroplast
GO:0009570cellular_componentchloroplast stroma
GO:0008886molecular_functionglyceraldehyde-3-phosphate dehydrogenase (NADP+) activity
GO:0008943molecular_functionglyceraldehyde-3-phosphate dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4329.1.S1_at--968--1571Chr03:1643030..1643054 (25 bp)
AGCTCAACGGCATCGCGCTGCGCGT
LOC_Os03g03720
Os.4329.1.S1_at--293--8631Chr03:1643075..1643099 (25 bp)
TGGTGGACCTGGTGATCAACACCGT
LOC_Os03g03720
Os.4329.1.S1_at--752--371Chr03:1643089..1643113 (25 bp)
ATCAACACCGTGAAGACCGGCATCA
LOC_Os03g03720
Os.4329.1.S1_at--53--7591Chr03:1643307..1643437 (25 bp)
GGGCTACAGCCAACGCGTGGTCGAT
LOC_Os03g03720
Os.4329.1.S1_at--332--2611Chr03:1643424..1643448 (25 bp)
AACGCGTGGTCGATCTGGCGCATCT
LOC_Os03g03720
Os.4329.1.S1_at--1091--5811Chr03:1643527..1643551 (25 bp)
GACCGACGAGTGCAAAGTGTACGAA
LOC_Os03g03720
Os.4329.1.S1_at--655--6991Chr03:1643545..1643569 (25 bp)
GTACGAAAACTAAGACCACTGTCCA
LOC_Os03g03720
Os.4329.1.S1_at--613--2771Chr03:1643556..1643580 (25 bp)
AAGACCACTGTCCAAGTACGGGCTC
LOC_Os03g03720
Os.4329.1.S1_at--970--1911Chr03:1643573..1643597 (25 bp)
ACGGGCTCGCGTAGGTGCAGAAATA
LOC_Os03g03720
Os.4329.1.S1_at--274--2191Chr03:1643624..1643648 (25 bp)
ACACATTGACTGTCCCCGGGCAGAA
LOC_Os03g03720
Os.4329.1.S1_at--902--7591Chr03:1643641..1643665 (25 bp)
GGGCAGAACTGCTATACTATATATA
LOC_Os03g03720
Target Sequence 
AGCTCAACGGCATCGCGCTGCGCGTGCCGACCCCGAACGTGTCCGTGGTGGACCTGGTGATCAACACCGTGAAGACCGGC
ATCACCGCCGACGACGTGAACGCCGCGTTCCGCAAGGCCGCGGCGGGGCCACTCAGCGGCATCCTCGACGTCTGCGACGT
GCCGCTGGTGTCCGTCGACTTCCGCTGCTCCGACGTCTCCTCCACCATNGACGCCTCGCTCACCATGGTCATGGGCGACG
ACATGGTCAAGGTGGTCGCCTGGTACGACAACGAGTGGGGCTACAGCCAACGCGTGGTCGATCTGGCGCATCTGGTGGCG
AGCAAGTGGCCCGGCGCGGCGGTGCAGGGCAGCGGCGACCCACTGGAGGACTTNTGCAAGGACAACCCGGAGACCGACGA
GTGCAAAGTGTACGAAAACTAAGACCACTGTCCAAGTACGGGCTCGCGTAGGTGCAGAAATATATACTCCTATAATGTAA
CGAAGCACACACATTGACTGTCCCCGGGCAGAACTGCTATACTATATATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4329.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis