Browse Element(s) Details


Os.43459.1.S1_at

Description gb:CF291795
DB_XREF= gi:33660828
DB_XREF=14ROOT--02-F24.g1
CLONE=14ROOT--02-F24
TID=Os.43459.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.43459 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0489G09.14 (P0489G09.14), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g119809/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g11946Os.26825.2.S1_x_at11/111+6497511..6503888ABC transporter family protein, putative, expressed
LOC_Os01g11946Os.26825.1.S1_at11/111+6497511..6503888ABC transporter family protein, putative, expressed
LOC_Os01g11952Os.50353.1.S1_at11/111+6504158..6511442PHD finger protein, putative, expressed
LOC_Os01g11960Os.16133.1.S1_at11/111+6514930..6517828PHD-finger family protein, expressed
LOC_Os01g11970NANA1+6520511..6521254hypothetical protein
LOC_Os01g11980Os.43459.1.S1_at9/111+6522334..6524252expressed protein
LOC_Os01g11990Os.30623.1.S1_at11/111+6525599..6528647expressed protein
LOC_Os01g11990Os.51808.1.S1_at8/111+6525599..6528647expressed protein
LOC_Os01g11990Os.53454.1.S1_x_at2/111+6525599..6528647expressed protein
LOC_Os01g12000Os.5066.1.S1_at11/111+6531414..6532631expressed protein
LOC_Os01g12010OsAffx.23211.1.S1_at11/111+6534456..6534698hypothetical protein
LOC_Os01g12020Os.37822.2.S2_at11/111+6537810..6539878Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os01g12020Os.37822.2.S1_at11/111+6537810..6539878Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os01g12030Os.37822.1.A2_at4/111+6538773..6541263Glycosyl hydrolase family 9 protein
LOC_Os01g12030Os.32667.2.S1_x_at1/111+6538773..6541263Glycosyl hydrolase family 9 protein
LOC_Os01g12040OsAffx.22940.5.S1_x_at11/111+6543516..6551069Transposable element protein, putative, MuDR
LOC_Os01g12040OsAffx.22940.2.S1_s_at11/111+6543516..6551069Transposable element protein, putative, MuDR
LOC_Os01g12040OsAffx.22940.5.S1_at11/111+6543516..6551069Transposable element protein, putative, MuDR
LOC_Os01g12040OsAffx.22940.1.S1_s_at11/111+6543516..6551069Transposable element protein, putative, MuDR
LOC_Os01g12040Os.35344.3.S1_x_at10/111+6543516..6551069Transposable element protein, putative, MuDR
LOC_Os01g12040Os.35344.18.S1_x_at10/111+6543516..6551069Transposable element protein, putative, MuDR
LOC_Os01g12040OsAffx.22940.2.S1_at8/111+6543516..6551069Transposable element protein, putative, MuDR
LOC_Os01g12040OsAffx.22940.3.S1_x_at8/111+6543516..6551069Transposable element protein, putative, MuDR
LOC_Os01g12040OsAffx.31552.2.S1_at1/111+6543516..6551069Transposable element protein, putative, MuDR

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.43459.1.S1_at--479--8071Chr01:6522387..6522411 (25 bp)
GGAGCAGCCGGAGGATTCTATCCTT
LOC_Os01g11980
Os.43459.1.S1_at--610--10131Chr01:6522405..6522429 (25 bp)
TATCCTTGGCGACACCGAGGGCATA
LOC_Os01g11980
Os.43459.1.S1_at--1103--551Chr01:6523387..6523609 (25 bp)
ATCCTAGCAGTTGGGAGCTTTCCTA
LOC_Os01g11980
Os.43459.1.S1_at--287--10771Chr01:6523628..6523652 (25 bp)
TTGAGGATGATGCTTGACCCAGTTC
LOC_Os01g11980
Os.43459.1.S1_at--721--5811Chr01:6523643..6523667 (25 bp)
GACCCAGTTCGTGTGTATGCAACAG
LOC_Os01g11980
Os.43459.1.S1_at--697--651Chr01:6523659..6523683 (25 bp)
ATGCAACAGCTATTTACGGTGGATT
LOC_Os01g11980
Os.43459.1.S1_at--123--4811Chr01:6523694..6523714 (21 bp)
GCTCTAATTTTTGCTCTTTGGATCC
LOC_Os01g11980
Os.43459.1.S1_at--1118--7971Chr01:6523809..6523832 (24 bp)
GGATCCATTCCAAGGTTCTAACATT
LOC_Os01g11980
Os.43459.1.S1_at--19--491Chr01:6523852..6524054 (25 bp)
ATCTGTGCTCTGTTCTGGTATAGTT
LOC_Os01g11980
Os.43459.1.S1_at--30--3791Chr01:6524764..6524788 (25 bp)
CTCGGCGAATGGTGTCTGACCTGAT
NONE
Os.43459.1.S1_at--335--7371Chr01:6524800..6524824 (25 bp)
GTGACACTGAACTTTGACCTGATGG
NONE
Target Sequence 
GGAGCAGCCGGAGGATTCTATCCTTGGCGACACCGAGGGCATANGCTCCCTATCCCCTGTCCAGCGGGTCTACGGCTTCG
CCGCGTGCTTGGTTGCGGGACTGGCTCTGATGATCCTGTNNNNTNTNNTNNNCNNNAGACCCATCAAATTTGCAGTCATT
TTACATTTGGAAACATCCTAGCAGTTGGGAGCTTTCCTAATAGGGCCAAGTCAACAGTTGAGGATGATGCTTGACCCAGT
TCGTGTGTATGCAACAGCTATTTACGGTGGATTTGTTTTTCTGGCTCTAATTTTTGCTCTTTGGATCCATTCCAAGGTTC
TAACATTGATTGCAATCATATGCGAGATCTGTGCTCTGTTCTGGTATAGTTTGAGCTACATCCCTTTCGCTCGGCGAATG
GTGTCTGACCTGATGGTGAAGCTCTGTGACACTGAACTTTGACCTGATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.43459.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis