Browse Element(s) Details


Os.43624.1.S1_at

Description gb:AK120134.1
DB_XREF= gi:37989757
TID=Os.43624.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.43624 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0066B06.32 (OSJNBa0066B06.32), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013027E07, full insert sequence.
FL= gb:AK120134.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g234946/11hypothetical protein
LOC_Os06g351201/11retrotransposon protein, putative, LINE subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g23460OsAffx.21754.1.S1_x_at2/117+13246980..13253052retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g23470OsAffx.28552.1.S1_at11/117+13255025..13256930Thaumatin family protein
LOC_Os07g23480NANA7+13259424..13269808retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g23494Os.43624.1.S1_at6/117+13274520..13281970hypothetical protein
LOC_Os07g23494OsAffx.2182.1.S1_at1/117+13274520..13281970hypothetical protein
LOC_Os07g23510OsAffx.28553.1.S1_x_at11/117+13282995..13283402expressed protein
LOC_Os07g23520Os.9398.2.S1_at11/117+13286278..13291643expressed protein
LOC_Os07g23520Os.9398.1.S1_a_at10/117+13286278..13291643expressed protein
LOC_Os07g23530OsAffx.16381.4.S1_at11/117+13292110..13292430hypothetical protein
LOC_Os07g23540OsAffx.16381.2.S1_x_at11/117+13293115..13303996expressed protein
LOC_Os07g23540OsAffx.16381.1.S1_x_at7/117+13293115..13303996expressed protein
LOC_Os07g23540OsAffx.16381.3.S1_x_at4/117+13293115..13303996expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.43624.1.S1_at--196--6491Chr07:13274820..13274844 (25 bp)
GATACCGGCGATGGCTAATTTGCAG
LOC_Os07g23494
Os.43624.1.S1_at--745--2431Chr07:13274766..13274790 (25 bp)
AAAAGATGTCTTATCAGCCCAAAAG
LOC_Os07g23494
Os.43624.1.S1_at--913--2751Chr07:13274711..13274735 (25 bp)
AAGACAGGCAGGGTTCAACAGGCGT
LOC_Os07g23494
Os.43624.1.S1_at--325--971Chr07:13274671..13274695 (25 bp)
AGGAGCCAGCGGCTATGCTGAAACA
LOC_Os07g23494
Os.43624.1.S1_at--58--2011Chr07:13274649..13274673 (25 bp)
ACAGGCGCCGGAGATAGGTTTTCAA
LOC_Os07g23494
Os.43624.1.S1_at--42--9771Chr07:13274538..13274562 (25 bp)
TAAACTGGCGGGTTCCATGAAGGGA
LOC_Os07g23494
Os.43624.1.S1_at--944--5192Chr11:10578554..10578575 (22 bp)
GAACTGTCGTGGCATTGGGAACCCC
NONE
Os.43624.1.S1_at--366--8591Chr07:13274467..13274491 (25 bp)
TGGGAACCCCACGACAGTTTGGGAT
NONE
Os.43624.1.S1_at--759--1192Chr06:20432755..20432814 (24 bp)
AGTTTGGGATCTTTGTGCCTTGGTC
LOC_Os06g35120
Os.43624.1.S1_at--614--8551Chr07:13274432..13274456 (25 bp)
TGGTCGGGAGGCTGGTTCCAAAATT
NONE
Os.43624.1.S1_at--910--2291Chr07:13274374..13274398 (25 bp)
AAAGTTCGTCGGCTTCGGAATAGAT
NONE
Target Sequence 
GATACCGGCGATGGCTAATTTGCAGCAAGCTGCATCTTTTGGAGAAGTCTCAACAAAAGATGTCTTATCAGCCCAAAAGA
GGAGTACACCAGCACAAAGTGGACTCAAGAAGACAGGCAGGGTTCAACAGGCGTTGATTGAGCTAGGACAGGAGCCAGCG
GCTATGCTGAAACAGGCGCCGGAGATAGGTTTTCAAGGCAGGGAGTTCAAAAGATTCAAGAAGACAGACAGGGAAGCTTT
GGTGGGGGGAGAGTCGGAAGCAACCAGCCCTGGGGCTGCTGGTAAACTGGCGGGTTCCATGAAGGGAACTCGCCAGGAGC
AATAAGTTGTTTAAGTTGGAACTGTCGTGGCATTGGGAACCCCACGACAGTTTGGGATCTTTGTGCCTTGGTCGGGAGGC
TGGTTCCAAAATTGTGTTTCTTTGTGAGACGAGACAAAAGTTTGAAAAAGTTCGTCGGCTTCGGAATAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.43624.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis