Browse Element(s) Details


Os.43916.1.S1_at

Description gb:AK111731.1
DB_XREF= gi:37988394
TID=Os.43916.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.43916 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Putative protein kinase (OSJNBa0081P02.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023038I10, full insert sequence.
FL= gb:AK111731.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1252011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12490OsAffx.25860.1.S1_x_at11/113+6581278..6585396transposon protein, putative, unclassified
LOC_Os03g12490Os.12304.1.S1_at6/113+6581278..6585396transposon protein, putative, unclassified
LOC_Os03g12490OsAffx.25860.2.S1_x_at5/113+6581278..6585396transposon protein, putative, unclassified
LOC_Os03g12500Os.7678.1.S1_at11/113+6587692..6589708Cytochrome P450 74A2, putative, expressed
LOC_Os03g12510Os.12163.1.S1_at11/113+6604090..6605196Non-symbiotic hemoglobin 2, putative, expressed
LOC_Os03g12510Os.12191.1.S1_s_at11/113+6604090..6605196Non-symbiotic hemoglobin 2, putative, expressed
LOC_Os03g12520Os.43916.1.S1_at11/113+6606076..6609359Protein kinase domain containing protein, expressed
LOC_Os03g12530Os.34767.1.S1_at11/113+6615790..6620665Metal tolerance protein C3, putative, expressed
LOC_Os03g12530Os.34767.2.S1_s_at11/113+6615790..6620665Metal tolerance protein C3, putative, expressed
LOC_Os03g12530Os.15382.1.A1_at11/113+6615790..6620665Metal tolerance protein C3, putative, expressed
LOC_Os03g12540OsAffx.25069.1.S1_at11/113+6620531..6621229hypothetical protein
LOC_Os03g12550Os.17828.1.S1_s_at11/113+6626405..6632923expressed protein
LOC_Os03g12560Os.9413.1.S1_at11/113+6633739..6635783expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.43916.1.S1_at--253--991Chr03:6608795..6608819 (25 bp)
AGGAGGGCCCTAGCAGCACATGCAT
LOC_Os03g12520
Os.43916.1.S1_at--279--2191Chr03:6608861..6608885 (25 bp)
ACACATTATGTGCTCTGTTCTTCTT
LOC_Os03g12520
Os.43916.1.S1_at--148--7591Chr03:6608965..6608989 (25 bp)
GGGCTCACAGAGTTTCAGGTCATTG
LOC_Os03g12520
Os.43916.1.S1_at--962--3471Chr03:6608980..6609004 (25 bp)
CAGGTCATTGGCTGTGATTCTCCAT
LOC_Os03g12520
Os.43916.1.S1_at--997--8671Chr03:6608992..6609016 (25 bp)
TGTGATTCTCCATTGTTCCTTCAGT
LOC_Os03g12520
Os.43916.1.S1_at--465--9231Chr03:6609008..6609032 (25 bp)
TCCTTCAGTCCTTACCTTTGTTTAG
LOC_Os03g12520
Os.43916.1.S1_at--771--231Chr03:6609048..6609072 (25 bp)
ATATTTTTGCAATTTCGCTGTCCCG
LOC_Os03g12520
Os.43916.1.S1_at--383--6991Chr03:6609081..6609105 (25 bp)
GTACGTAAGGGTCCATTCCACTGCA
LOC_Os03g12520
Os.43916.1.S1_at--299--1571Chr03:6609114..6609138 (25 bp)
AGCTACGTCGTGTTCTTATCTTAAG
LOC_Os03g12520
Os.43916.1.S1_at--723--6311Chr03:6609266..6609290 (25 bp)
GATGACTGTGGCTTGATTGTTCGCA
LOC_Os03g12520
Os.43916.1.S1_at--586--51Chr03:6609281..6609305 (25 bp)
ATTGTTCGCATTACGCTGTCAGCTG
LOC_Os03g12520
Target Sequence 
AGGAGGGCCCTAGCAGCACATGCATACTAACACCAGCCCATGCATCAAACCAACTTAGCATCCAAAACACATTATGTGCT
CTGTTCTTCTTGGATGCTGAGACTTGTTAAACAGCTGGTGATTGTACCATGTACTACTCACAAATCAATCAAACTGCTAA
AAGGGTCCAAGGGCTCACAGAGTTTCAGGTCATTGGCTGTGATTCTCCATTGTTCCTTCAGTCCTTACCTTTGTTTAGGT
TTCAGATCAGTAGATATTTTTGCAATTTCGCTGTCCCGTTCTGTAGGTACGTAAGGGTCCATTCCACTGCATGACTGCAA
GCTACGTCGTGTTCTTATCTTAAGACATTTATTGACATCACACCGATGGGAGACAAACTGACAACCGAAGGACTGTAGAG
AAAATAGGAGGCCTCCTTATCAAAGAGAGAAACATTAATAGAGACAATATCTCAGTGTAGCTGCAGTTTGTGATGACTGT
GGCTTGATTGTTCGCATTACGCTGTCAGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.43916.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis