Browse Element(s) Details


Os.44002.1.S1_at

Description gb:NM_187348.1
DB_XREF= gi:34901781
GEN=OJ1457_D07.3
TID=Os.44002.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.44002 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~similar to Arabidopsis thaliana chromosome 4, hypothetical protein (OJ1457_D07.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~similar to Arabidopsis thaliana chromosome 4, hypothetical protein (OJ1457_D07.3), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3131011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g31270Os.49873.1.S1_at11/117+18508310..18513451expressed protein
LOC_Os07g31280Os.18100.1.S1_at11/117+18517697..18521925Casein kinase II beta-4 subunit, putative, expressed
LOC_Os07g31280Os.47708.1.A1_at11/117+18517697..18521925Casein kinase II beta-4 subunit, putative, expressed
LOC_Os07g31290OsAffx.16505.2.S1_x_at11/117+18526814..18530103Protein kinase APK1B, chloroplast precursor, putative
LOC_Os07g31300Os.5814.1.S1_at11/117+18530853..18533386ATP synthase delta chain, mitochondrial precursor, putative, expressed
LOC_Os07g31310Os.44002.1.S1_at11/117+18536271..18539583expressed protein
LOC_Os07g31320Os.25527.1.S1_at11/117+18544075..18545159expressed protein
LOC_Os07g31330NANA7+18550305..18551409hypothetical protein
LOC_Os07g31340Os.18837.1.A1_a_at11/117+18553848..18563525Regulator of nonsense transcripts 1 homolog, putative, expressed
LOC_Os07g31340Os.18837.3.S1_x_at10/117+18553848..18563525Regulator of nonsense transcripts 1 homolog, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0005753cellular_componentproton-transporting ATP synthase complex (sensu Eukaryota)
GO:0046933molecular_functionhydrogen-transporting ATP synthase activity, rotational mechanism
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.44002.1.S1_at--932--9971Chr07:18536841..18536865 (25 bp)
TACCAATCCATCCTTTACCATAAAG
LOC_Os07g31310
Os.44002.1.S1_at--336--1291Chr07:18536791..18536815 (25 bp)
AGATGCCCCTCAGAAATTCGTCTTT
LOC_Os07g31310
Os.44002.1.S1_at--932--4791Chr07:18536731..18536755 (25 bp)
GCTCTCGAGAGCACTTAACTTTTGA
LOC_Os07g31310
Os.44002.1.S1_at--796--9732Chr08:2210048..2210446 (25 bp)
TCAATTCTTTTCTTCTGCAAGGCAA
NONE
Os.44002.1.S1_at--214--271Chr07:18536671..18536695 (25 bp)
ATATGATGGACGATGCTTTGAGCAC
LOC_Os07g31310
Os.44002.1.S1_at--58--9791Chr07:18536620..18536644 (25 bp)
TAAGACCCAGTCTGCATACCTTTTG
LOC_Os07g31310
Os.44002.1.S1_at--134--9071Chr07:18536608..18536632 (25 bp)
TGCATACCTTTTGCCACATACTGTG
LOC_Os07g31310
Os.44002.1.S1_at--268--7951Chr07:18536582..18536606 (25 bp)
GGATATTCTTCACTAGGCATGCATA
LOC_Os07g31310
Os.44002.1.S1_at--243--5991Chr07:18536491..18536515 (25 bp)
GAGACTTGCTTGACTGCTTGATTTT
LOC_Os07g31310
Os.44002.1.S1_at--1022--10371Chr07:18536470..18536494 (25 bp)
TTTTGAATTTCCTAAACGCTGGCTA
LOC_Os07g31310
Os.44002.1.S1_at--886--1831Chr07:18536455..18536479 (25 bp)
ACGCTGGCTATTTTGCAAGAGTCAT
LOC_Os07g31310
Target Sequence 
TACCAATCCATCCTTTACCATAAAGGATGTTGCCAAAATAGTCAAGGATGAGATGCCCCTCAGAAATTCGTCTTTGCTTT
CCAGTTTGGTTCAAGAAATAGAACATTATAGCTCTCGAGAGCACTTAACTTTTGAGTTCAATAATTCAATTCTTTTCTTC
TGCAAGGCAAATATGATGGACGATGCTTTGAGCACATATAAGCGGATGAGAGAGCAGAATGTAAGACCCAGTCTGCATAC
CTTTTGCCACATACTGTGTGGATATTCTTCACTAGGCATGCATAGGGAGATTGCCATGCTGTGGGGAGAAATAAAGCGCA
GACTCGAATATGGAGAGCTAACTGTGGATAGAGACTTGCTTGACTGCTTGATTTTGAATTTCCTAAACGCTGGCTATTTT
GCAAGAGTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.44002.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis