Browse Element(s) Details


Os.44009.1.S1_at

Description gb:CB629359
DB_XREF= gi:29624348
DB_XREF=OSIIEb05I15.r
CLONE=OSIIEb05I15
TID=Os.44009.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.44009 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative wall-associated protein kinase (OJ1058_B11.7), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3121011/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g31190OsAffx.28689.1.S1_at11/117+18451961..18460762expressed protein
LOC_Os07g31200OsAffx.28690.1.S1_at9/117+18473342..18474200hypothetical protein
LOC_Os07g31210Os.44009.1.S1_at11/117+18477349..18479358Protein kinase domain containing protein
LOC_Os07g31220NANA7+18480206..18480860hypothetical protein
LOC_Os07g31230OsAffx.28692.1.S1_at10/117+18485023..18487346hypothetical protein
LOC_Os07g31230OsAffx.23391.1.S1_at2/117+18485023..18487346hypothetical protein
LOC_Os07g31240NANA7+18489093..18493475retrotransposon protein, putative, unclassified
LOC_Os07g31250Os.35935.2.S1_at11/117+18496568..18501005Protein kinase domain containing protein, expressed
LOC_Os07g31260Os.10451.2.S1_at11/117+18501793..18505457expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.44009.1.S1_at--420--71Chr07:18478879..18478903 (25 bp)
ATTGCTCACCTGCATTCACTTGGCG
LOC_Os07g31210
Os.44009.1.S1_at--711--7331Chr07:18478906..18478930 (25 bp)
GTGCATGGCGATGTCAGCATTAACG
LOC_Os07g31210
Os.44009.1.S1_at--299--331Chr07:18478933..18478957 (25 bp)
ATACTGCTGGATCATGTCTCTTCGT
LOC_Os07g31210
Os.44009.1.S1_at--85--9411Chr07:18478954..18478978 (25 bp)
TCGTCCCTGGTAAAGATTGCTGGCT
LOC_Os07g31210
Os.44009.1.S1_at--1094--4271Chr07:18478996..18479020 (25 bp)
CCTGACATCGACAAGGCTCTGGATT
LOC_Os07g31210
Os.44009.1.S1_at--917--9431Chr07:18479013..18479037 (25 bp)
TCTGGATTCGCTTGAAACCGGTCAT
LOC_Os07g31210
Os.44009.1.S1_at--863--8691Chr07:18479145..18479169 (25 bp)
TGTGCTACTGCACCAGGAAGCCATC
LOC_Os07g31210
Os.44009.1.S1_at--859--551Chr07:18479167..18479191 (25 bp)
ATCCGTGGGCGTAGATGCAATCATC
LOC_Os07g31210
Os.44009.1.S1_at--981--711Chr07:18479197..18479221 (25 bp)
ATGATCAAGGGCTTGGCTTCACGGT
LOC_Os07g31210
Os.44009.1.S1_at--57--5151Chr07:18479266..18479290 (25 bp)
GCAAAACATCTCAACTTCATACTTA
LOC_Os07g31210
Os.44009.1.S1_at--91--5531Chr07:18479307..18479331 (25 bp)
GAAAACTTGCCATGACCTGGCGATT
LOC_Os07g31210
Target Sequence 
ATTGCTCACCTGCATTCACTTGGCGTCGTGCATGGCGATGTCAGCATTAACGACATACTGCTGGATCATGTCTCTTCGTC
CCTGGTAAAGATTGCTGGCTATGGGACATCAGGGCTCCCTGACATCGACAAGGCTCTGGATTCGCTTGAAACCGGTCATG
GGAAGAAGGAGCATGATGTGTACAGTTTTGGGCTTGTTCTCCTAACCCTCTTCACGTGGAAGAAGGTGTCACTGCCANAT
GATCTCAAGTCCGAGCCTGACANACCTGTGCTACTGCACCAGGAAGCCATCCGTGGGCGTAGATGCAATCATCTTGAGAT
GATCAAGGGCTTGGCTTCACGGTGNCTGACGTCCGAGGCGACGAAGAGACCATCCATGGTGGAAGTAGCAAAACATCTCA
ACTTCATACTTATTTTTCCTGAAAGGAGGAAAACTTGCCATGACCTGGCGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.44009.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis