Browse Element(s) Details

Os.4407.1.S1_at

Description

gb:AK101114.1
DB_XREF= gi:32986323
TID=Os.4407.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4407 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative cell division control protein (P0514G12.29), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033025G10, full insert sequence.
FL= gb:AK101114.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g01980	11/11	Cell division control protein 48 homolog C, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g01934	Os.9332.2.S1_x_at	11/11	6	+	522061..529058	bell-like homeodomain protein 3, putative, expressed
LOC_Os06g01934	Os.9332.2.S1_at	11/11	6	+	522061..529058	bell-like homeodomain protein 3, putative, expressed
LOC_Os06g01934	Os.9332.1.S1_at	11/11	6	+	522061..529058	bell-like homeodomain protein 3, putative, expressed
LOC_Os06g01934	Os.53217.1.S1_x_at	4/11	6	+	522061..529058	bell-like homeodomain protein 3, putative, expressed
LOC_Os06g01934	Os.43567.1.S1_x_at	4/11	6	+	522061..529058	bell-like homeodomain protein 3, putative, expressed
LOC_Os06g01934	Os.38172.1.S1_x_at	3/11	6	+	522061..529058	bell-like homeodomain protein 3, putative, expressed
LOC_Os06g01950	OsAffx.22608.1.S1_at	11/11	6	+	529833..531434	phosphoglycerate mutase family protein, expressed
LOC_Os06g01960	OsAffx.22608.3.S1_x_at	11/11	6	+	532475..534605	hypothetical protein
LOC_Os06g01960	OsAffx.22608.3.S1_at	11/11	6	+	532475..534605	hypothetical protein
LOC_Os06g01960	Os.4403.1.A1_x_at	4/11	6	+	532475..534605	hypothetical protein
LOC_Os06g01966	Os.4404.1.S1_at	11/11	6	+	542058..544778	Integral membrane protein DUF6 containing protein, expressed
LOC_Os06g01966	Os.4404.1.S1_s_at	11/11	6	+	542058..544778	Integral membrane protein DUF6 containing protein, expressed
LOC_Os06g01972	Os.11580.1.S1_at	10/11	6	+	545505..549383	Integral membrane protein DUF6 containing protein, expressed
LOC_Os06g01980	Os.4407.1.S1_at	11/11	6	+	549954..554812	Cell division control protein 48 homolog C, putative, expressed
LOC_Os06g01980	Os.4407.2.S1_at	10/11	6	+	549954..554812	Cell division control protein 48 homolog C, putative, expressed
LOC_Os06g01990	Os.44850.1.S1_at	11/11	6	+	554637..555548	HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed
LOC_Os06g02000	Os.52419.1.S1_at	11/11	6	+	563535..566659	Uridylate kinase, putative, expressed
LOC_Os06g02010	NA	NA	6	+	572964..573323	hypothetical protein
LOC_Os06g02019	Os.10689.1.S1_at	11/11	6	+	579671..585449	Cytochrome P450 88A1, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0006950	biological_process	response to stress
GO:0016558	biological_process	protein import into peroxisome matrix
GO:0005516	molecular_function	calmodulin binding
GO:0016887	molecular_function	ATPase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.4407.1.S1_at--1103--323	1	Chr06:554333..554357 (25 bp)	CAAGCTGATATATATTGCGCCATGC	LOC_Os06g01980
Os.4407.1.S1_at--341--1071	1	Chr06:554347..554371 (25 bp)	TTGCGCCATGCTTACAGAGATCCAT	LOC_Os06g01980
Os.4407.1.S1_at--662--135	1	Chr06:554362..554386 (25 bp)	AGAGATCCATGTCCTCTGAGTTGCT	LOC_Os06g01980
Os.4407.1.S1_at--1055--725	1	Chr06:554372..554396 (25 bp)	GTCCTCTGAGTTGCTTGCAGGGAAA	LOC_Os06g01980
Os.4407.1.S1_at--436--985	1	Chr06:554398..554422 (25 bp)	TACAGGTTTCGCTTGCAACCAATTT	LOC_Os06g01980
Os.4407.1.S1_at--861--1077	1	Chr06:554441..554465 (25 bp)	TTGTTCCCCTTTGAGTAGGCCTTGT	LOC_Os06g01980
Os.4407.1.S1_at--712--843	1	Chr06:554458..554482 (25 bp)	GGCCTTGTGGCAATTTTGTGCGACC	LOC_Os06g01980
Os.4407.1.S1_at--218--1057	1	Chr06:554544..554568 (25 bp)	TTCTTTTCACTTATTGTACCATTCA	LOC_Os06g01980
Os.4407.1.S1_at--1035--697	1	Chr06:554559..554583 (25 bp)	GTACCATTCATCATCTTGTATTGTA	LOC_Os06g01980
Os.4407.1.S1_at--822--35	1	Chr06:554614..554638 (25 bp)	ATAATCATCCAATTAAGCCCCTACT	LOC_Os06g01980
Os.4407.1.S1_at--269--979	1	Chr06:554627..554651 (25 bp)	TAAGCCCCTACTATGCTCCAAGTTG	LOC_Os06g01980

Target Sequence

CAAGCTGATATATATTGCGCCATGCTTACAGAGATCCATGTCCTCTGAGTTGCTTGCAGGGAAAATACAGGTTTCGCTTG
CAACCAATTTTGGTTTTGCCCTTTTTTTTTGTTCCCCTTTGAGTAGGCCTTGTGGCAATTTTGTGCGACCGAAACATAGA
TGGTTGAGTGAGTAGTAGTATGAATATGCGAGAAAAATAGTTGTTTTTTTTTTCTTTTCACTTATTGTACCATTCATCAT
CTTGTATTGTAATACAAACTTCATATTGGTTATGAGATTGCATAATCATCCAATTAAGCCCCTACTATGCTCCAAGTTG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis