Browse Element(s) Details


Os.44296.1.S1_at

Description gb:NM_186738.1
DB_XREF= gi:34900561
GEN=P0565A07.13
TID=Os.44296.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.44296 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0565A07.13 (P0565A07.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0565A07.13 (P0565A07.13), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1337011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g13330OsAffx.22422.1.S1_at11/117+7644046..7644327hypothetical protein
LOC_Os07g13340NANA7+7646670..7655594retrotransposon protein, putative, unclassified
LOC_Os07g13350OsAffx.32101.3.S1_x_at11/117+7659453..7662678hypothetical protein
LOC_Os07g13360OsAffx.4155.1.S1_at1/117+7665062..7665406hypothetical protein
LOC_Os07g13370Os.44296.1.S1_at11/117+7666690..7667091expressed protein
LOC_Os07g13380OsAffx.5316.1.S1_at11/117+7668345..7668584hypothetical protein
LOC_Os07g13390OsAffx.22940.1.S1_s_at10/117+7673414..7680964Transposable element protein, putative, MuDR
LOC_Os07g13390OsAffx.22940.5.S1_x_at10/117+7673414..7680964Transposable element protein, putative, MuDR
LOC_Os07g13390Os.35344.3.S1_x_at10/117+7673414..7680964Transposable element protein, putative, MuDR
LOC_Os07g13390Os.35344.18.S1_x_at10/117+7673414..7680964Transposable element protein, putative, MuDR
LOC_Os07g13390OsAffx.22940.2.S1_s_at9/117+7673414..7680964Transposable element protein, putative, MuDR
LOC_Os07g13390OsAffx.22940.5.S1_at9/117+7673414..7680964Transposable element protein, putative, MuDR
LOC_Os07g13390OsAffx.22940.2.S1_at8/117+7673414..7680964Transposable element protein, putative, MuDR
LOC_Os07g13390OsAffx.22940.3.S1_x_at6/117+7673414..7680964Transposable element protein, putative, MuDR
LOC_Os07g13400OsAffx.22421.2.S1_at1/117+7686410..7688767transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13400OsAffx.16244.1.S1_x_at1/117+7686410..7688767transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.44296.1.S1_at--700--9691Chr07:7667036..7667060 (25 bp)
TCACTCTGCCTTCTCTCTCATGTGT
LOC_Os07g13370
Os.44296.1.S1_at--470--3771Chr07:7667022..7667046 (25 bp)
CTCTCATGTGTGTGCGAGTGTGTGC
LOC_Os07g13370
Os.44296.1.S1_at--785--7292Chr07:7667011..7667035 (25 bp)
GTGCGAGTGTGTGCGGCGAGCGCGA
LOC_Os07g13370
Os.44296.1.S1_at--887--5391Chr07:7666928..7666952 (25 bp)
GAAGCTTCCAAGAGACCGTCGCCAC
LOC_Os07g13370
Os.44296.1.S1_at--280--2951Chr07:7666818..7666842 (25 bp)
AAGGCTGGCAAGAAGCTCGCCTACC
LOC_Os07g13370
Os.44296.1.S1_at--987--4691Chr07:7666815..7666839 (25 bp)
GCTGGCAAGAAGCTCGCCTACCTTG
LOC_Os07g13370
Os.44296.1.S1_at--1069--8491Chr07:7666813..7666837 (25 bp)
TGGCAAGAAGCTCGCCTACCTTGCC
LOC_Os07g13370
Os.44296.1.S1_at--493--3791Chr07:7666760..7666784 (25 bp)
CTCGCCTTGGGCTCGGCAGGAACTC
LOC_Os07g13370
Os.44296.1.S1_at--1090--10811Chr07:7666754..7666778 (25 bp)
TTGGGCTCGGCAGGAACTCGACGGA
LOC_Os07g13370
Os.44296.1.S1_at--772--8311Chr07:7666751..7666775 (25 bp)
GGCTCGGCAGGAACTCGACGGAGGT
LOC_Os07g13370
Os.44296.1.S1_at--635--8931Chr07:7666721..7666745 (25 bp)
TGACCGGGCTGCTGAGTGAGTCGGC
LOC_Os07g13370
Target Sequence 
TCACTCTGCCTTCTCTCTCATGTGTGTGCGAGTGTGTGCGGCGAGCGCGACCGGCGATGGGCGGCGACCGCNTCCTCGAC
ACCTTCCTCTGCCTTGCCGACGNCCACGGAAGCTTCCAAGAGACCGTCGCCACGCTCAAGCAGGANGTCGCCGAGGCGCT
GGTCACCATCTGCCGCCGCAACGACGCGCGCCTCGNCTCCGNGNTGCATTTANAGCGCAAGGCTGGCAAGAAGCTCGCCT
ACCTTGCCGCTGNAGCGAGGGACGGCGCCAGGCCGTCTCGCCTTGGGCTCGGCAGGAACTCGACGGAGGTGGAGGTGACC
GGGCTGCTGAGTGAGTCGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.44296.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis