Browse Element(s) Details


Os.44418.1.S1_at

Description gb:AK119367.1
DB_XREF= gi:37988990
TID=Os.44418.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.44418 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~predicted by nn (OJ1664_D08.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-131-H05, full insert sequence.
FL= gb:AK119367.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1115011/11expressed protein
LOC_Os08g280103/11expressed protein
LOC_Os02g036402/11hypothetical protein
LOC_Os10g202701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g11080OsAffx.8864.1.S1_at8/117+6123094..6126197retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g11090Os.46273.1.S1_at3/117+6126567..6127886retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g11100OsAffx.16208.1.S1_at11/117+6131217..6131664hypothetical protein
LOC_Os07g11100OsAffx.20978.1.S1_at5/117+6131217..6131664hypothetical protein
LOC_Os07g11110Os.8521.2.S1_x_at11/117+6132315..6135056mRNA-binding protein precursor, putative, expressed
LOC_Os07g11110Os.8521.1.S1_at11/117+6132315..6135056mRNA-binding protein precursor, putative, expressed
LOC_Os07g11110Os.8521.1.S1_a_at10/117+6132315..6135056mRNA-binding protein precursor, putative, expressed
LOC_Os07g11110Os.51424.1.S1_at1/117+6132315..6135056mRNA-binding protein precursor, putative, expressed
LOC_Os07g11120Os.9994.1.S1_at11/117+6135357..6139332hydrolase, NUDIX family protein, expressed
LOC_Os07g11130OsAffx.1477.1.S1_at11/117+6144464..6144910retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g11150Os.44418.2.S1_at11/117+6145270..6150849expressed protein
LOC_Os07g11150Os.44418.1.S1_at11/117+6145270..6150849expressed protein
LOC_Os07g11160OsAffx.20490.1.S1_at6/117+6153663..6157210transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g11170OsAffx.10237.1.S1_at8/117+6157915..6158907retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g11180NANA7+6160014..6162998retrotransposon protein, putative, unclassified
LOC_Os07g11190OsAffx.8166.1.S1_at1/117+6164271..6166541transposon protein, putative, unclassified
LOC_Os07g11200NANA7+6166805..6169329retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g11210OsAffx.22465.1.S1_at4/117+6170380..6171401retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g11220NANA7+6174985..6178617retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.44418.1.S1_at--288--5553Chr08:16932056..16932080 (25 bp)
GAAACCTGACAATCAGGACAGCCAT
LOC_Os08g28010
Os.44418.1.S1_at--105--5653Chr08:16932072..16932096 (25 bp)
GACAGCCATATGGTACATGCACATA
LOC_Os08g28010
Os.44418.1.S1_at--64--7733Chr08:16932102..16932296 (25 bp)
GGTGGTGCATACAAGAAACAACAGT
LOC_Os08g28010
Os.44418.1.S1_at--624--5592Chr02:1511673..1511697 (25 bp)
GAAATTTTGTGACTGCTAGTACGCA
NONE
Os.44418.1.S1_at--631--4852Chr02:1511687..1511711 (25 bp)
GCTAGTACGCAACTAGGTCACCTGT
NONE
Os.44418.1.S1_at--130--1034Chr12:2507347..2507367 (21 bp)
AGGTCACCTGTACATGTCACGGAAT
NONE
Os.44418.1.S1_at--601--3334Chr08:16932821..16932845 (25 bp)
CACGGAATGATGATGGCTGCAAGGT
NONE
Os.44418.1.S1_at--440--10214Chr08:16932895..16932919 (25 bp)
TATTTTCTGCATTAATGTTCTGAAC
NONE
Os.44418.1.S1_at--693--6714Chr08:16932911..16932935 (25 bp)
GTTCTGAACAAAGGTTTAATGCCAT
NONE
Os.44418.1.S1_at--552--4433Chr02:1511825..1511849 (25 bp)
GCCATGAATTATACTGATGATTGTC
NONE
Os.44418.1.S1_at--420--1975Chr12:2507485..2507507 (23 bp)
ACTGATGATTGTCTATGTAATGCAA
NONE
Target Sequence 
GAAACCTGACAATCAGGACAGCCATATGGTACATGCACATAAAGTTGGTGGTGCATACAAGAAACAACAGTGCAGCAAAA
TGGACTTTATCACTGACAATTTAATGGAGGTTGACAAGATAAATGGGTGAAGATGTGGGGGAAATTTTGTGACTGCTAGT
ACGCAACTAGGTCACCTGTACATGTCACGGAATGATGATGGCTGCAAGGTGGAGAATGGGGGCAACAAGATGTGTTTTTT
TTATATACTTTAGATTCTATTTTCTGCATTAATGTTCTGAACAAAGGTTTAATGCCATGAATTATACTGATGATTGTCTA
TGTAATGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.44418.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis