Browse Element(s) Details


Os.44418.2.S1_at

Description gb:NM_186486.1
DB_XREF= gi:34900057
GEN=OJ1664_D08.9
TID=Os.44418.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.44418 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~predicted by nn (OJ1664_D08.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~similar to Oryza sativa chromosome 10, OSJNBb0052C09.3 (OJ1664_D08.9), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1115011/11expressed protein
LOC_Os02g0364011/11hypothetical protein
LOC_Os10g202707/11hypothetical protein
LOC_Os08g280106/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g11080OsAffx.8864.1.S1_at8/117+6123094..6126197retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g11090Os.46273.1.S1_at3/117+6126567..6127886retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g11100OsAffx.16208.1.S1_at11/117+6131217..6131664hypothetical protein
LOC_Os07g11100OsAffx.20978.1.S1_at5/117+6131217..6131664hypothetical protein
LOC_Os07g11110Os.8521.2.S1_x_at11/117+6132315..6135056mRNA-binding protein precursor, putative, expressed
LOC_Os07g11110Os.8521.1.S1_at11/117+6132315..6135056mRNA-binding protein precursor, putative, expressed
LOC_Os07g11110Os.8521.1.S1_a_at10/117+6132315..6135056mRNA-binding protein precursor, putative, expressed
LOC_Os07g11110Os.51424.1.S1_at1/117+6132315..6135056mRNA-binding protein precursor, putative, expressed
LOC_Os07g11120Os.9994.1.S1_at11/117+6135357..6139332hydrolase, NUDIX family protein, expressed
LOC_Os07g11130OsAffx.1477.1.S1_at11/117+6144464..6144910retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g11150Os.44418.2.S1_at11/117+6145270..6150849expressed protein
LOC_Os07g11150Os.44418.1.S1_at11/117+6145270..6150849expressed protein
LOC_Os07g11160OsAffx.20490.1.S1_at6/117+6153663..6157210transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g11170OsAffx.10237.1.S1_at8/117+6157915..6158907retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g11180NANA7+6160014..6162998retrotransposon protein, putative, unclassified
LOC_Os07g11190OsAffx.8166.1.S1_at1/117+6164271..6166541transposon protein, putative, unclassified
LOC_Os07g11200NANA7+6166805..6169329retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g11210OsAffx.22465.1.S1_at4/117+6170380..6171401retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g11220NANA7+6174985..6178617retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.44418.2.S1_at--269--2234Chr08:16932321..16932428 (25 bp)
ACAATTCAATGGAGGTTGGAACTAA
LOC_Os08g28010
Os.44418.2.S1_at--103--3433Chr02:1511351..1511375 (25 bp)
CGGAATACAAACGTGGCTCTTGCCA
LOC_Os02g03640
Os.44418.2.S1_at--174--8313Chr02:1511365..1511389 (25 bp)
GGCTCTTGCCACTATTGTAAGCTGT
LOC_Os02g03640
Os.44418.2.S1_at--227--10354Chr08:16932535..16932559 (25 bp)
TTTTTAATGGTTCATGTCGATCTTG
LOC_Os08g28010
Os.44418.2.S1_at--39--4034Chr08:16932552..16932576 (25 bp)
CGATCTTGCATTGGCAAAATCCGAA
LOC_Os08g28010
Os.44418.2.S1_at--460--553Chr02:1511467..1511491 (25 bp)
ATCCGAAGATTTGATTAGGCCATAC
LOC_Os02g03640
Os.44418.2.S1_at--49--2254Chr08:16932605..16932629 (25 bp)
AAATTGTTGGTCATGTTGTAGGACT
LOC_Os08g28010
Os.44418.2.S1_at--680--3593Chr08:16932619..16932642 (24 bp)
GTTGTAGGACTTGAAATTGCGTGGC
LOC_Os08g28010
Os.44418.2.S1_at--543--4672Chr02:1511534..1511558 (25 bp)
GCGTGGCCTGCAATTTTTATATGTT
LOC_Os02g03640
Os.44418.2.S1_at--443--8432Chr02:1511538..1511562 (25 bp)
GGCCTGCAATTTTTATATGTTCCTA
LOC_Os02g03640
Os.44418.2.S1_at--160--10173Chr08:16932656..16932678 (23 bp)
TATATGTTCCTATCTCTTACTTCTT
LOC_Os08g28010
Target Sequence 
ACAATTCAATGGAGGTTGGAACTAAAGTATTCTTAAAAAGTTGGAAAAATCGGAATACAAACGTGGCTCTTGCCACTATT
GTAAGCTGTGATCCAACACGCAGAGTTGGAGGTGTTGAGCTAGGAAATGAATTTTTAATGGTTCATGTCGATCTTGCATT
GGCAAAATCCGAAGATTTGATTAGGCCATACAAAGGCTACAAAATTGTTGGTCATGTTGTAGGACTTGAAATTGCGTGGC
CTGCAATTTTTATATGTTCCTATCTCTTACTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.44418.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis