Browse Element(s) Details


Os.44735.1.S1_at

Description gb:CA754019
DB_XREF= gi:25798058
DB_XREF=BR040007000_PLATE_E09_69_070.ab1
CLONE=BR040007000_PLATE_E09_69_070.ab1
TID=Os.44735.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.44735 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) EST AU070273(S21075) corresponds to a region of the predicted gene.~Similar to Arabidopsis thaliana chromosome 1 BAC F28K20 sequence, F28K20.12. (AC004793) (Gene), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g077609/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g07710NANA6+3732347..3735479hypothetical protein
LOC_Os06g07720OsAffx.8279.1.S1_at1/116+3735816..3741496retrotransposon protein, putative, unclassified
LOC_Os06g07720Os.52731.1.S1_at1/116+3735816..3741496retrotransposon protein, putative, unclassified
LOC_Os06g07730OsAffx.16451.1.A1_x_at1/116+3741797..3742687hypothetical protein
LOC_Os06g07730OsAffx.31867.1.S1_x_at1/116+3741797..3742687hypothetical protein
LOC_Os06g07740OsAffx.4756.1.S1_s_at11/116+3746262..3748210myb-like DNA-binding domain, SHAQKYF class family protein
LOC_Os06g07750OsAffx.22572.1.S1_x_at11/116+3751005..3751433hypothetical protein
LOC_Os06g07750OsAffx.22572.1.S1_at11/116+3751005..3751433hypothetical protein
LOC_Os06g07760Os.44735.1.S1_at9/116+3758841..3761129expressed protein
LOC_Os06g07770OsAffx.22571.2.S1_x_at11/116+3761999..3771827expressed protein
LOC_Os06g07780OsAffx.15303.1.S1_at11/116+3772673..3775481Synaptobrevin family protein, expressed
LOC_Os06g07780OsAffx.15303.1.S1_s_at11/116+3772673..3775481Synaptobrevin family protein, expressed
LOC_Os06g07780Os.3539.1.S1_at10/116+3772673..3775481Synaptobrevin family protein, expressed
LOC_Os06g07790Os.33661.2.S1_at5/116+3778654..3784952retrotransposon protein, putative, unclassified, expressed
LOC_Os06g07790Os.51788.2.S1_at2/116+3778654..3784952retrotransposon protein, putative, unclassified, expressed
LOC_Os06g07790OsAffx.2816.1.S1_at2/116+3778654..3784952retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.44735.1.S1_at--227--10631NONE
TTCGTCCTCCAATGGTGCAGCTGTT
NONE
Os.44735.1.S1_at--925--611Chr06:3759771..3759795 (25 bp)
ATGCGGACGCGTGCCAATGATCCAG
LOC_Os06g07760
Os.44735.1.S1_at--1129--571Chr06:3759790..3759814 (25 bp)
ATCCAGCCAAGGTGCAAGAACTCAT
LOC_Os06g07760
Os.44735.1.S1_at--395--8531Chr06:3759814..3759838 (25 bp)
TGGACAGTATCCGTGTCATTGGCCT
LOC_Os06g07760
Os.44735.1.S1_at--866--8451NONE
TGGCCTCCAAGTACCTATTGACGTA
NONE
Os.44735.1.S1_at--968--7151Chr06:3760666..3760790 (25 bp)
GTCTACTATGGTTTTTCTGGATGTC
LOC_Os06g07760
Os.44735.1.S1_at--1029--8551Chr06:3760783..3760807 (25 bp)
TGGATGTCACCGCTATGAGGCTCAC
LOC_Os06g07760
Os.44735.1.S1_at--213--6471Chr06:3761003..3761027 (25 bp)
GATAATCTGTGTACCTTTGTGTTCA
LOC_Os06g07760
Os.44735.1.S1_at--84--7431Chr06:3761021..3761045 (25 bp)
GTGTTCATATGCTATACTCCTGTAA
LOC_Os06g07760
Os.44735.1.S1_at--808--1991Chr06:3761036..3761060 (25 bp)
ACTCCTGTAATTGTAATCCTCCATA
LOC_Os06g07760
Os.44735.1.S1_at--784--731Chr06:3761068..3761092 (25 bp)
ATGTTACTCGAACAGACTGGTCCAT
LOC_Os06g07760
Target Sequence 
TTCGTCCTCCAATGGTGCAGCTGTTCCATCCTCCCTAAGTGACTCAGAGAAGAAGGGCCCTGTGGTGATGGAAATTCCAC
TGGACAAGATTAGGAGGCCACTGATGCGGACGCGTGCCAATGATCCAGCCAAGGTGCAAGAACTCATGGACAGTATCCGT
GTCATTGGCCTCCAAGTACCTATTGACGTACTGGAGGTTGATGGAGTCTACTATGGTTTTTCTGGATGTCACCGCTATGA
GGCTCACCAGCGCCTAGGTCTCCCGACTATCCGCTGCAAAGTCCGTCGCGGGACGAAAGAAACACTAAGGNNNNNNNNNN
NNTGAAATTGGAATGGACATACTACTTCAGTCAGAAAGTGATAATCTGTGTACCTTTGTGTTCATATGCTATACTCCTGT
AATTGTAATCCTCCATACTTGTNAATGTTACTCGAACAGACTGGTCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.44735.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis