Browse Element(s) Details

Os.44872.2.S1_x_at

Description

gb:NM_185329.1
DB_XREF= gi:34897743
TID=Os.44872.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.44872 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Similar to Arabidopsis thaliana DNA chromosome 4, ESSA I contig fragment No. 6, membrane protein homolog. (Z97341) (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) Similar to Arabidopsis thaliana DNA chromosome 4, ESSA I contig fragment No. 6, membrane protein homolog. (Z97341) (Gene), mRNA.
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g01660	11/11	Integral membrane protein DUF6 containing protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g01630	Os.22911.1.S1_a_at	11/11	6	+	369096..373968	pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase family protein, expressed
LOC_Os06g01640	Os.49738.1.S1_at	11/11	6	+	374706..381665	Protein arginine N-methyltransferase, putative, expressed
LOC_Os06g01650	Os.22256.2.S1_x_at	11/11	6	+	386223..392012	expressed protein
LOC_Os06g01650	Os.22256.1.S1_at	11/11	6	+	386223..392012	expressed protein
LOC_Os06g01650	Os.22256.2.S1_at	11/11	6	+	386223..392012	expressed protein
LOC_Os06g01650	Os.44933.1.S1_at	3/11	6	+	386223..392012	expressed protein
LOC_Os06g01650	Os.44933.2.S1_x_at	2/11	6	+	386223..392012	expressed protein
LOC_Os06g01650	Os.44933.2.S1_at	2/11	6	+	386223..392012	expressed protein
LOC_Os06g01660	Os.44872.1.S1_at	11/11	6	+	393580..396914	Integral membrane protein DUF6 containing protein, expressed
LOC_Os06g01660	Os.44872.2.S1_x_at	11/11	6	+	393580..396914	Integral membrane protein DUF6 containing protein, expressed
LOC_Os06g01670	Os.23936.1.S1_at	11/11	6	+	397679..402494	myb family transcription factor, putative, expressed
LOC_Os06g01680	Os.9729.3.S1_a_at	11/11	6	+	402739..409270	expressed protein
LOC_Os06g01690	Os.32187.1.S1_at	11/11	6	+	409926..412035	Septum site-determining protein minD, putative, expressed
LOC_Os06g01700	Os.19955.1.S1_at	11/11	6	+	412319..415043	Cwf15/Cwc15 cell cycle control protein, expressed
LOC_Os06g01700	Os.19955.1.S2_at	11/11	6	+	412319..415043	Cwf15/Cwc15 cell cycle control protein, expressed
LOC_Os06g01710	OsAffx.10379.1.A1_at	10/11	6	+	415531..419161	expressed protein
LOC_Os06g01720	Os.50408.1.S1_at	11/11	6	+	419781..424168	expressed protein

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Gene Ontology Classification

GO id	Type	Name
GO:0016020	cellular_component	membrane

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.44872.2.S1_x_at--618--229	1	Chr06:395831..395855 (25 bp)	AAATGGCCTTCCAAGATTTCTCGCA	LOC_Os06g01660
Os.44872.2.S1_x_at--791--847	1	Chr06:395800..395824 (25 bp)	TGGCGCAATTCGTGTTCATAGCTCT	LOC_Os06g01660
Os.44872.2.S1_x_at--605--853	1	Chr06:395182..395206 (25 bp)	TGGACTCATCTTCATCATTGCGGCT	LOC_Os06g01660
Os.44872.2.S1_x_at--959--359	1	Chr06:395079..395191 (25 bp)	CATTGCGGCTTGTTTCAGGTTGGAG	LOC_Os06g01660
Os.44872.2.S1_x_at--1093--87	1	Chr06:394985..395009 (25 bp)	ATGGCCATGAGCTTCTTGCAGAGTC	LOC_Os06g01660
Os.44872.2.S1_x_at--1137--67	1	Chr06:394921..394945 (25 bp)	ATGACTGGATCCTTGGTTGCTTCTA	LOC_Os06g01660
Os.44872.2.S1_x_at--577--1005	1	Chr06:394882..394906 (25 bp)	TAGTTGTTCTCTCTATCTACACGGT	LOC_Os06g01660
Os.44872.2.S1_x_at--673--93	1	Chr06:394734..394758 (25 bp)	AGGCAGCGACGTTGGTGAGCTTCCC	LOC_Os06g01660
Os.44872.2.S1_x_at--110--251	1	Chr06:394685..394709 (25 bp)	AACATCGATGATGGGCGCCGTCTTC	LOC_Os06g01660
Os.44872.2.S1_x_at--658--637	1	Chr06:394655..394679 (25 bp)	GATCCTGCAGTTCATCGTGGACGGC	LOC_Os06g01660
Os.44872.2.S1_x_at--785--517	1	Chr06:394632..394656 (25 bp)	GCAAGATCGACATGGGCTCGCCGAG	LOC_Os06g01660

Target Sequence

AAATGGCCTTCCAAGATTTCTCGCACTCTCATGGCGCAATTCGTGTTCATAGCTCTTGGAGGAACAACGGTGTTTCAAGA
ACTGATGCTTCTGGGAATAAAGAAGACAACACCAGCTATCGCATCAGCCATGCCAAACTTGAGCCCTGGACTCATCTTCA
TCATTGCGGCTTGTTTCAGGTTGGAGAAGTTTGACAAGGGATGCAAGTACACAAGAGCCAAGATACTGGGAACGTTGGTG
TGCTTGGTGGGAGCTATGGCCATGAGCTTCTTGCAGAGTCCCGTTTCGTCTTCTCCACAACTCACAACAACTAGTTACTA
TGACTGGATCCTTGGTTGCTTCTACCTTTTCCTGGCAGTAGTTGTTCTCTCTATCTACACGGTGCTCCAGGCAGCGACGT
TGGTGAGCTTCCCTGCGCCATTGACGATGTGCAGCGTAACATCGATGATGGGCGCCGTCTTCACCGCGATCCTGCAGTTC
ATCGTGGACGGCAAGATCGACATGGGCTCGCCGAG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis