Browse Element(s) Details


Os.44984.1.S1_at

Description gb:AK111711.1
DB_XREF= gi:37988374
TID=Os.44984.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.44984 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative membrane protein (OSJNBa0052F07.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023024A21, full insert sequence.
FL= gb:AK111711.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5857011/11transducin family protein, putative, expressed
LOC_Os11g435901/11Kelch motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g58500NANA3+33260016..33260261hypothetical protein
LOC_Os03g58510OsAffx.25754.1.S1_at2/113+33263116..33263454hypothetical protein
LOC_Os03g58510OsAffx.18426.1.S1_x_at1/113+33263116..33263454hypothetical protein
LOC_Os03g58520Os.7978.1.S1_at11/113+33263949..33266142expressed protein
LOC_Os03g58530Os.7181.1.S1_at11/113+33267190..33272168ES43, putative, expressed
LOC_Os03g58540Os.29736.1.S1_at11/113+33273364..33277443GTP1/OBG family protein, expressed
LOC_Os03g58560OsAffx.25755.1.S1_at11/113+33283173..33283679hypothetical protein
LOC_Os03g58570Os.44984.1.S1_at11/113+33285249..33288881transducin family protein, putative, expressed
LOC_Os03g58570Os.44984.2.S1_x_at10/113+33285249..33288881transducin family protein, putative, expressed
LOC_Os03g58580Os.11778.1.S1_a_at11/113+33298997..33301304nodulin family protein, putative, expressed
LOC_Os03g58590Os.7283.2.S1_x_at11/113+33302937..33309543RE14858p, putative, expressed
LOC_Os03g58600Os.40026.1.S1_at11/113+33310275..33319166Argonaute-like protein At2g27880, putative, expressed
LOC_Os03g58600OsAffx.2925.1.S1_at1/113+33310275..33319166Argonaute-like protein At2g27880, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006888biological_processER to Golgi vesicle-mediated transport
GO:0030176cellular_componentintegral to endoplasmic reticulum membrane
GO:0000062molecular_functionacyl-CoA binding
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.44984.1.S1_at--171--6251Chr03:33288220..33288244 (25 bp)
GATGGAGCAAGATTTGTCCTCCACC
LOC_Os03g58570
Os.44984.1.S1_at--258--9291Chr03:33288248..33288272 (25 bp)
TCACCTTGCCCCTGAAATTTAAAAG
LOC_Os03g58570
Os.44984.1.S1_at--658--10472Chr11:25794420..25794439 (20 bp)
TTACTCTGCATTTCTGCAGTCTGCA
LOC_Os11g43590
Os.44984.1.S1_at--1153--6511Chr03:33288344..33288368 (25 bp)
GATTTGTCACATCAACTCTGTTCAT
LOC_Os03g58570
Os.44984.1.S1_at--232--3971Chr03:33288380..33288404 (25 bp)
CGGATGCTTAATGTTGTTTTCTGAA
LOC_Os03g58570
Os.44984.1.S1_at--551--6771Chr03:33288459..33288483 (25 bp)
GTTACAGTAGCAATTGTCTGCTTGT
LOC_Os03g58570
Os.44984.1.S1_at--56--4931Chr03:33288478..33288502 (25 bp)
GCTTGTATTGCAGGGTTGTAATCTC
LOC_Os03g58570
Os.44984.1.S1_at--1137--91Chr03:33288778..33288802 (25 bp)
ATTCAGAATCCATTGTAACACCAGC
LOC_Os03g58570
Os.44984.1.S1_at--946--2151Chr03:33288810..33288834 (25 bp)
ACAGCGATAGCTCCATTGTCATGAT
LOC_Os03g58570
Os.44984.1.S1_at--1118--8851Chr03:33288831..33288855 (25 bp)
TGATGAGCGCTTGCTCTATTTGCCA
LOC_Os03g58570
Os.44984.1.S1_at--742--10191Chr03:33288847..33288871 (25 bp)
TATTTGCCACTATTCATTTCTGATG
LOC_Os03g58570
Target Sequence 
GATGGAGCAAGATTTGTCCTCCACCAGTTCACCTTGCCCCTGAAATTTAAAAGGAAATTGTGGATTGGTTTTACTCTGCA
TTTCTGCAGTCTGCACTGCAATTGCAGATCCATATGTGAATGAAGATTTGTCACATCAACTCTGTTCATAAGCAAACATA
CGGATGCTTAATGTTGTTTTCTGAAATTACTGTACATTTTGGATGGCAATGCTGCAGATTTTTGAAGTACTGCTGGATAG
TTACAGTAGCAATTGTCTGCTTGTATTGCAGGGTTGTAATCTCCACTTCTCATAAATGGGGAGCAGAGGTAACGAAACTT
GATGTTCCTACTGATTGGAAAGTGTGGCAAATGTGGTTAGTACTCTCGTGTCTGTTTGTCACGTCGGCCATCCTATTCTA
TGCGTTCTTCAAACACGTGGTCCATTTGGAACCCTAAAGAACAGAATCTGGAGGAGAAAAATCATAAGTTTCTGACGATC
AGAAATTCAGAATCCATTGTAACACCAGCATGGCTAACAGCGATAGCTCCATTGTCATGATGAGCGCTTGCTCTATTTGC
CACTATTCATTTCTGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.44984.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis