Browse Element(s) Details


Os.44984.2.S1_x_at

Description gb:NM_185038.1
DB_XREF= gi:34897161
GEN=OSJNBa0052F07.14
TID=Os.44984.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.44984 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative membrane protein (OSJNBa0052F07.14), mRNA.
PROD=putative membrane protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5857010/11transducin family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g58500NANA3+33260016..33260261hypothetical protein
LOC_Os03g58510OsAffx.25754.1.S1_at2/113+33263116..33263454hypothetical protein
LOC_Os03g58510OsAffx.18426.1.S1_x_at1/113+33263116..33263454hypothetical protein
LOC_Os03g58520Os.7978.1.S1_at11/113+33263949..33266142expressed protein
LOC_Os03g58530Os.7181.1.S1_at11/113+33267190..33272168ES43, putative, expressed
LOC_Os03g58540Os.29736.1.S1_at11/113+33273364..33277443GTP1/OBG family protein, expressed
LOC_Os03g58560OsAffx.25755.1.S1_at11/113+33283173..33283679hypothetical protein
LOC_Os03g58570Os.44984.1.S1_at11/113+33285249..33288881transducin family protein, putative, expressed
LOC_Os03g58570Os.44984.2.S1_x_at10/113+33285249..33288881transducin family protein, putative, expressed
LOC_Os03g58580Os.11778.1.S1_a_at11/113+33298997..33301304nodulin family protein, putative, expressed
LOC_Os03g58590Os.7283.2.S1_x_at11/113+33302937..33309543RE14858p, putative, expressed
LOC_Os03g58600Os.40026.1.S1_at11/113+33310275..33319166Argonaute-like protein At2g27880, putative, expressed
LOC_Os03g58600OsAffx.2925.1.S1_at1/113+33310275..33319166Argonaute-like protein At2g27880, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006888biological_processER to Golgi vesicle-mediated transport
GO:0030176cellular_componentintegral to endoplasmic reticulum membrane
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.44984.2.S1_x_at--670--5671Chr03:33286368..33286673 (25 bp)
GACATTAGCTTAGACTCCGAGTTGT
LOC_Os03g58570
Os.44984.2.S1_x_at--802--6051Chr03:33286667..33286691 (25 bp)
GAGTTGTTAGTCTCAACATCCACTG
LOC_Os03g58570
Os.44984.2.S1_x_at--301--5871Chr03:33286725..33286749 (25 bp)
GAGCGCCGCTTGTCAATTTGAGTAG
LOC_Os03g58570
Os.44984.2.S1_x_at--882--2811Chr03:33286859..33286883 (25 bp)
AAGATTGAGTGCTGCTGCTTTTCTA
LOC_Os03g58570
Os.44984.2.S1_x_at--1134--2251Chr03:33286891..33286915 (25 bp)
AAATAAACCTTTCCTGTTCTGCACA
LOC_Os03g58570
Os.44984.2.S1_x_at--103--1551Chr03:33287079..33287103 (25 bp)
AGCATATCTCCACACTTTCAGTAAG
LOC_Os03g58570
Os.44984.2.S1_x_at--54--6911NONE
GTATCTCGCATTAGGAAGCCATGAT
NONE
Os.44984.2.S1_x_at--876--2731Chr03:33287830..33287854 (25 bp)
AAGAAGGTTCATCTTGGCTCTCCAA
LOC_Os03g58570
Os.44984.2.S1_x_at--852--7912Chr03:33288491..33288515 (25 bp)
GGTTGTAATCTCCACTTCTCATAAA
LOC_Os03g58570
Os.44984.2.S1_x_at--48--5551Chr03:33288533..33288557 (25 bp)
GAAACTTGATGTTCCTACTGATTGG
LOC_Os03g58570
Os.44984.2.S1_x_at--101--2991Chr03:33288643..33288667 (25 bp)
AATGTGGTTAGTACTCTCGTGTCTG
LOC_Os03g58570
Target Sequence 
GACATTAGCTTAGACTCCGAGTTGTTAGTCTCAACATCCACTGATGGTTCTGCAAGAATATGGAATATAGATGAGGGAGC
GCCGCTTGTCAATTTGAGTAGATCTTCGGATGAGAAGATTGAGTGCTGCTGCTTTTCTAGGGATGGAAATAAACCTTTCC
TGTTCTGCACACTTGTGAAAGGTCATAACGTTGTGACTGTGGTTTTGGACATAAGTAATTGGAAGAGGATCGGGTACAAG
AGGCTTTTGGAAAAGCATATCTCCACACTTTCAGTAAGCTTGGATGGAAAGTATCTCGCATTAGGAAGCCATGATAGTGA
TTTCTGCGTTGTGGATGTTAAAAAGATGGAAGTTTTGCACTTGAGCAAGAAGGTTCATCTTGGCTCTCCAATTTCATCAA
TTGAATTTTGTCCTACAGAAAGGGTTGTAATCTCCACTTCTCATAAATGGGGAGCAGAGGTAACGAAACTTGATGTTCCT
ACTGATTGGAAAGTGTGGCAAATGTGGTTAGTACTCTCGTGTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.44984.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis