Browse Element(s) Details


Os.45212.1.S1_x_at

Description gb:NM_196452.1
DB_XREF= gi:37534263
TID=Os.45212.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45212 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) contains similarity to gag-pol polyprotein (OSJNBa0015J03.8), mRNA.
PROD=contains similarity to gag-pol polyprotein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2704011/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g1761010/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g327308/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g226508/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g020807/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g176906/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g191303/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g300703/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g337002/11retrotransposon protein, putative, unclassified
LOC_Os11g148302/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g179102/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g125401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g295201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g430201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g110901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g223101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g405701/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g170301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g337601/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g049401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g402841/11retrotransposon protein, putative, unclassified, expressed
LOC_Os07g143901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g241101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g139201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g136101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g200501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g241201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g125501/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g26980NANA10+13894568..13894951hypothetical protein
LOC_Os10g26990Os.27689.1.S1_at11/1110+13896705..13900487Kelch motif family protein, expressed
LOC_Os10g27000NANA10+13905955..13906224hypothetical protein
LOC_Os10g27010OsAffx.8136.1.S1_at11/1110+13906834..13908150transposon protein, putative, Pong sub-class, expressed
LOC_Os10g27020OsAffx.8135.1.S1_at11/1110+13908706..13909849transposon protein, putative, Pong sub-class
LOC_Os10g27030NANA10+13910556..13913442Transposable element protein, putative, Transposase_28
LOC_Os10g27040Os.45212.1.S1_x_at11/1110+13914797..13920843retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g27050Os.56095.1.S1_at11/1110+13924340..13929419Serine/threonine protein phosphatase PP2A-4 catalytic subunit, putative, expressed
LOC_Os10g27050Os.27801.2.A1_x_at11/1110+13924340..13929419Serine/threonine protein phosphatase PP2A-4 catalytic subunit, putative, expressed
LOC_Os10g27050Os.27801.1.A1_at10/1110+13924340..13929419Serine/threonine protein phosphatase PP2A-4 catalytic subunit, putative, expressed
LOC_Os10g27050Os.27228.2.S1_at1/1110+13924340..13929419Serine/threonine protein phosphatase PP2A-4 catalytic subunit, putative, expressed
LOC_Os10g27060Os.18180.1.S1_a_at11/1110+13929788..13932440SET domain protein 123, putative, expressed
LOC_Os10g27070OsAffx.30558.1.S1_at11/1110+13938898..13939601hypothetical protein
LOC_Os10g27080NANA10+13940075..13941192hypothetical protein
LOC_Os10g27090OsAffx.20353.1.S1_at11/1110+13942064..13948943hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45212.1.S1_x_at--1104--67314Chr12:24135388..24135412 (25 bp)
GTTCATGCTTCTTTATGGCGATGAG
NONE
Os.45212.1.S1_x_at--438--59511Chr12:11105459..11105483 (25 bp)
GAGCACATGCGCAAGTATGCCACAG
LOC_Os12g19130
Os.45212.1.S1_x_at--947--51714Chr12:11105469..11105493 (25 bp)
GCAAGTATGCCACAGGCACTTCGGC
LOC_Os12g19130
Os.45212.1.S1_x_at--715--2857Chr11:9852401..9852420 (20 bp)
AAGGCGAACCCGATAGCCGTTGGCA
LOC_Os11g17690
Os.45212.1.S1_x_at--761--4575Chr10:8570187..8570211 (25 bp)
GCGAACCCGATAGCCGTTGGCAAGC
LOC_Os10g17610
Os.45212.1.S1_x_at--282--2618Chr11:9852402..9852426 (25 bp)
AACCCGATAGCCGTTGGCAAGCTTG
LOC_Os11g17690
Os.45212.1.S1_x_at--444--1819Chr11:9852403..9852427 (25 bp)
ACCCGATAGCCGTTGGCAAGCTTGA
LOC_Os11g17690
Os.45212.1.S1_x_at--623--4236Chr11:9852405..9852429 (25 bp)
CCGATAGCCGTTGGCAAGCTTGAAT
LOC_Os11g17690
Os.45212.1.S1_x_at--556--63710Chr11:9852407..9852431 (25 bp)
GATAGCCGTTGGCAAGCTTGAATCG
LOC_Os11g17690
Os.45212.1.S1_x_at--1147--5735Chr10:8570258..8570282 (25 bp)
GACGGGGTCCTTTCGACTGGCGACA
LOC_Os10g17610
Os.45212.1.S1_x_at--147--7717Chr11:23525243..23525266 (24 bp)
GGGGTCCTTTCGACTGGCGACACTT
LOC_Os11g40284
Target Sequence 
GTTCATGCTTCTTTATGGCGATGAGGCAATGACCCNNACAGAGCTAGGGGCTAACTCACCAAGGGNTGACGTTCTCTNGG
GGCGAAGAGGGGCGCGAGGTGTCGCNCGAACTCTTGGAGGGGGTAAGAGTCGAAGCACTNGAGCACATGCGCAAGTATGC
CACAGGCACTTCGGCAACTTANAACAAAAAAGTTCGACCNGACGGAGCTGTTGCCTGGTNATCNTGTCNTAAGGAAAAAG
GCGAACCCGATAGCCGTTGGCAAGCTTGAATCGAAGTGGGAAGGACCATACCTCATCAAGCACAAGTCCAGGACGGGGTC
CTTTCGACTGGCGACACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45212.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis