Browse Element(s) Details


Os.4531.1.S1_at

Description gb:AK066656.1
DB_XREF= gi:32976674
TID=Os.4531.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.4531 (NCBI UniGene Cluster)
UG_TITLE=O.sativa panC gene
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013072H13, full insert sequence.
FL= gb:AK066656.1 gb:AK104812.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6349011/11Pantoate-beta-alanine ligase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g63440OsAffx.25808.1.S1_at11/113+35779584..35782332hypothetical protein
LOC_Os03g63450Os.18419.1.S1_at11/113+35785019..35793232SnRK1-interacting protein 1, putative, expressed
LOC_Os03g63470Os.49864.2.S1_x_at11/113+35794524..35799482transducin family protein, putative, expressed
LOC_Os03g63470Os.49864.1.S1_s_at11/113+35794524..35799482transducin family protein, putative, expressed
LOC_Os03g63470Os.49864.2.S1_s_at11/113+35794524..35799482transducin family protein, putative, expressed
LOC_Os03g63470Os.11424.1.S1_x_at7/113+35794524..35799482transducin family protein, putative, expressed
LOC_Os03g63480Os.7979.1.S1_at10/113+35800460..35803069Ankyrin repeat domain protein 2, putative, expressed
LOC_Os03g63490Os.4531.1.S1_at11/113+35804135..35806721Pantoate-beta-alanine ligase, putative, expressed
LOC_Os03g63500Os.21096.1.S1_at10/113+35807631..35814424AFG1-like ATPase family protein, putative, expressed
LOC_Os03g63510Os.24799.1.S1_at11/113+35816478..35821838pentatricopeptide, putative, expressed
LOC_Os03g63520Os.35309.1.A1_at11/113+35822454..35827086Der1-like family protein, expressed
LOC_Os03g63530Os.19270.1.S1_at10/113+35829135..35833105Histone-like transcription factor and archaeal histone family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015940biological_processpantothenate biosynthesis
GO:0004592molecular_functionpantoate-beta-alanine ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4531.1.S1_at--480--2691Chr03:35805643..35805667 (25 bp)
AAGCTGATGGTCTTGCCATGAGCTC
LOC_Os03g63490
Os.4531.1.S1_at--280--5291Chr03:35805671..35805695 (25 bp)
GAATGTGCACCTATCACGCGAGGAG
LOC_Os03g63490
Os.4531.1.S1_at--1053--6331Chr03:35806031..35806055 (25 bp)
GATGCTAGAACTGGCGCCTTGAAGG
LOC_Os03g63490
Os.4531.1.S1_at--166--11Chr03:35806377..35806401 (25 bp)
AGAAAGTTTGGTCCCTGTAGAACAG
LOC_Os03g63490
Os.4531.1.S1_at--385--10031Chr03:35806394..35806418 (25 bp)
TAGAACAGATCGACGGCCCTGTGGT
LOC_Os03g63490
Os.4531.1.S1_at--202--4271Chr03:35806411..35806435 (25 bp)
CCTGTGGTCATTTGCGTTGCGGCGT
LOC_Os03g63490
Os.4531.1.S1_at--558--511Chr03:35806471..35806495 (25 bp)
ATCGATACACGATCCTGAGGTTTTG
LOC_Os03g63490
Os.4531.1.S1_at--558--3871Chr03:35806517..35806541 (25 bp)
CTGTGACCTTGGCATTGCGTTTGAA
LOC_Os03g63490
Os.4531.1.S1_at--1127--2251Chr03:35806540..35806564 (25 bp)
AAATACCTTTTGTTTCGCGTGATGA
LOC_Os03g63490
Os.4531.1.S1_at--791--6571Chr03:35806563..35806587 (25 bp)
GATTCGCGTCATGTTGTACGCTGTA
LOC_Os03g63490
Os.4531.1.S1_at--349--9071Chr03:35806683..35806707 (25 bp)
TGCTTGTTGATTACAGATTCCGCTG
LOC_Os03g63490
Target Sequence 
AAGCTGATGGTCTTGCCATGAGCTCNCGGAATGTGCACCTATCACGCGAGGAGAGGGAAAAGGCATTATCCATCAGTAGA
TCACTGGTTGATGCTAGAACTGGCGCCTTGAAGGGAAACACTGATTNCAAACAAATCAAAAACAAAATAGTACAGACACT
AACTGAAACTGGCGGTCAGGTTGACTATGTTGAGATCGTGGAGCAAGAAAGTTTGGTCCCTGTAGAACAGATCGACGGCC
CTGTGGTCATTTGCGTTGCGGCGTGGTTTGGAAAGGTCAGGCTGATCGATAATATCGAAATCGATACACGATCCTGAGGT
TTTGGGGGGATTCACTTGCTGTCTGCTGTGACCTTGGCATTGCGTTTGAAATACCTTTTGTTTCGCGTGATGATTCGCGT
CATGTTGTACGCTGTAACAATCACAGAGAGAAAATATGCAGGAGTACACTGACTGAAGGCAAATTTATAAGTACAAACTG
TAGAGGCCTGATGCTGTAACAGGGGAAATCATGCTTGTTGATTACAGATTCCGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4531.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis