Browse Element(s) Details


Os.45407.1.S1_x_at

Description gb:BE039834
DB_XREF= gi:8334850
DB_XREF=OC08G09
TID=Os.45407.1
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45407 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative ribosomal protein L26 (P0480E02.15), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g047305/1160S ribosomal protein L26-1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04710Os.739.1.S1_at11/111+2117207..2119122Eukaryotic aspartyl protease family protein, expressed
LOC_Os01g04720Os.742.1.S1_x_at11/111+2127815..2134096leucine-rich repeat protein, putative, expressed
LOC_Os01g04730Os.45407.1.S1_s_at11/111+2134587..213579760S ribosomal protein L26-1, putative, expressed
LOC_Os01g04730Os.26422.1.S1_x_at11/111+2134587..213579760S ribosomal protein L26-1, putative, expressed
LOC_Os01g04730Os.26422.1.S1_s_at11/111+2134587..213579760S ribosomal protein L26-1, putative, expressed
LOC_Os01g04730OsAffx.10909.1.S1_at10/111+2134587..213579760S ribosomal protein L26-1, putative, expressed
LOC_Os01g04730Os.45407.1.S1_x_at5/111+2134587..213579760S ribosomal protein L26-1, putative, expressed
LOC_Os01g04740OsAffx.22789.2.A1_at10/111+2137667..2138893hypothetical protein
LOC_Os01g04750Os.45405.1.A1_at11/111+2151128..2152796DNA-binding protein RAV1, putative, expressed
LOC_Os01g04760OsAffx.23115.1.S1_at11/111+2159525..2159773hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0015934cellular_componentlarge ribosomal subunit
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45407.1.S1_x_at--1105--9351NONE
TCGATTAGGTTCGTGGGTCGGATCT
NONE
Os.45407.1.S1_x_at--432--8631NONE
TGGGTCGGATCTGCTGGTGCTCGTA
NONE
Os.45407.1.S1_x_at--50--8611NONE
TGGTGCTCGTATTGTTCCTCCCCCT
NONE
Os.45407.1.S1_x_at--467--4191Chr01:2135173..2135197 (25 bp)
CCCTCCTTATCTAGCTTTTGTTTCG
LOC_Os01g04730
Os.45407.1.S1_x_at--782--4891Chr01:2135186..2135210 (25 bp)
GCTTTTGTTTCGCTATCAACTGCTT
LOC_Os01g04730
Os.45407.1.S1_x_at--479--10791Chr01:2135190..2135212 (23 bp)
TTGTTTCGCTATCAACTGCTTCTTT
LOC_Os01g04730
Os.45407.1.S1_x_at--173--3851NONE
CTGCTTCTTTTAGGAGTTCATGCTA
NONE
Os.45407.1.S1_x_at--260--6751Chr01:2135220..2135244 (25 bp)
GTTCATGCTACCTGAACACTGCTTG
LOC_Os01g04730
Os.45407.1.S1_x_at--119--1771Chr01:2135229..2135253 (25 bp)
ACCTGAACACTGCTTGCTGCTTTAT
LOC_Os01g04730
Os.45407.1.S1_x_at--175--10171NONE
TATCATTGAAAATGTCTCCTTGAGA
NONE
Os.45407.1.S1_x_at--985--4311NONE
CCTTGAGAGTTTTGGATCCTTGATC
NONE
Target Sequence 
TCGATTAGGTTCGTGGGTCGGATCTGCTGGTGCTCGTATTGTTCCTCCCCCTCCTTATCTAGCTTTTGTTTCGCTATCAA
CTGCTTCTTTTAGGAGTTCATGCTACCTGAACACTGCTTGCTGCTTTATCATTGAAAATGTCTCCTTGAGAGTTTTGGAT
CCTTGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45407.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis