Browse Element(s) Details


Os.45412.1.S1_at

Description gb:AK121677.1
DB_XREF= gi:37991300
TID=Os.45412.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.45412 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0480E02.8 (P0480E02.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033069D19, full insert sequence.
FL= gb:AK121677.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0469011/11hypothetical protein
LOC_Os12g251101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04650Os.4763.1.S1_at11/111+2080483..2084005PB1 domain containing protein, expressed
LOC_Os01g04650Os.4763.1.S2_at11/111+2080483..2084005PB1 domain containing protein, expressed
LOC_Os01g04660Os.16097.1.S1_a_at11/111+2093994..2097496Lipid phosphate phosphatase 2, putative, expressed
LOC_Os01g04670OsAffx.10908.1.S1_at11/111+2099100..2099402hypothetical protein
LOC_Os01g04680OsAffx.22792.1.S1_at6/111+2101993..2104641retrotransposon protein, putative, unclassified
LOC_Os01g04690Os.45412.1.S1_at11/111+2105749..2106437hypothetical protein
LOC_Os01g04699NANA1+2107828..2108453hypothetical protein
LOC_Os01g04710Os.739.1.S1_at11/111+2117207..2119122Eukaryotic aspartyl protease family protein, expressed
LOC_Os01g04720Os.742.1.S1_x_at11/111+2127815..2134096leucine-rich repeat protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45412.1.S1_at--860--2451Chr01:2106179..2106203 (25 bp)
AACAAGGTCGCTCATCACGCTTAGG
LOC_Os01g04690
Os.45412.1.S1_at--1066--6952Chr12:14418196..14418217 (22 bp)
GTAGCAGCTGGATTAGCTTCGCCTG
LOC_Os12g25110
Os.45412.1.S1_at--941--4911Chr01:2106073..2106097 (25 bp)
GCTTCGCCTGCTTCAGTTATGTATA
LOC_Os01g04690
Os.45412.1.S1_at--948--7151Chr01:2106025..2106049 (25 bp)
GTCGTTTAAATTAGCTGCCCTTTTG
LOC_Os01g04690
Os.45412.1.S1_at--1063--10791Chr01:2106003..2106027 (25 bp)
TTGTTTTTCTTCTGCATGCTGGTTC
LOC_Os01g04690
Os.45412.1.S1_at--558--3531Chr01:2105989..2106013 (25 bp)
CATGCTGGTTCTTCCATCTGATGAA
LOC_Os01g04690
Os.45412.1.S1_at--367--231Chr01:2105944..2105968 (25 bp)
ATATTAGCTGCCGTTTTGTTCTGTT
LOC_Os01g04690
Os.45412.1.S1_at--90--6751Chr01:2105877..2105901 (25 bp)
GTTCATCACTCATGTGGTACTCCAC
LOC_Os01g04690
Os.45412.1.S1_at--524--2891Chr01:2105850..2105874 (25 bp)
AAGGTCCAGGCAACTTTTGTTAGCA
LOC_Os01g04690
Os.45412.1.S1_at--475--6131Chr01:2105825..2105849 (25 bp)
GAGGTCTTTGTCAGTTTTGTTGGCT
LOC_Os01g04690
Os.45412.1.S1_at--484--10811Chr01:2105786..2105810 (25 bp)
TTGTAGCTCCCTTCTTCTTGTATGA
LOC_Os01g04690
Target Sequence 
AACAAGGTCGCTCATCACGCTTAGGCACACCGCCAATGGCAGATACACAATCGCTAGCCGCTCCTGCGATCTTGATTCAG
GTATTTACATGGTAGCAGCTGGATTAGCTTCGCCTGCTTCAGTTATGTATAGTACAAGCTTTGGCAGTTAACCAGTCGTT
TAAATTAGCTGCCCTTTTGTTTTTCTTCTGCATGCTGGTTCTTCCATCTGATGAAAATGGAAGGCGACTGGAATTATATT
AGCTGCCGTTTTGTTCTGTTGGTCCTCCCATCTGCTGAAAATGGAAGGCACCTGGGAGCAGAGTTCATCACTCATGTGGT
ACTCCACACAAGGTCCAGGCAACTTTTGTTAGCAGAGGTCTTTGTCAGTTTTGTTGGCTTTGTGCTTGTAGGCTTGTAGC
TCCCTTCTTCTTGTATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45412.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis