Browse Element(s) Details


Os.45428.1.S1_at

Description gb:NM_184255.1
DB_XREF= gi:34895591
TID=Os.45428.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45428 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g041001/11expressed protein
LOC_Os01g649601/11Photosystem II 22 kDa protein, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04030Os.16822.1.S1_at10/111+1751134..1754530Signal peptidase subunit family protein, expressed
LOC_Os01g04040NANA1+1754614..1755532Bowman-Birk type wound-induced proteinase inhibitor WIP1 precursor, putative
LOC_Os01g04050Os.3729.1.S1_at11/111+1756956..1757937Bowman-Birk type wound-induced proteinase inhibitor WIP1 precursor, putative, expressed
LOC_Os01g04070OsAffx.22797.1.S1_at11/111+1761836..1765746Leucine Rich Repeat family protein, expressed
LOC_Os01g04080Os.30899.1.S1_at10/111+1768299..1769212expressed protein
LOC_Os01g04090Os.31762.2.S1_x_at11/111+1772846..1774907expressed protein
LOC_Os01g04090Os.31762.1.S1_at11/111+1772846..1774907expressed protein
LOC_Os01g04100Os.27368.1.A1_at11/111+1777892..1779183expressed protein
LOC_Os01g04100Os.45428.1.S1_at1/111+1777892..1779183expressed protein
LOC_Os01g04110Os.10066.2.S1_at5/111+1786432..1788237expressed protein
LOC_Os01g04120Os.45427.1.A1_at11/111+1798832..1803069expressed protein
LOC_Os01g04120Os.23841.1.A1_at11/111+1798832..1803069expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0010196biological_processnonphotochemical quenching
GO:0009517cellular_componentPSII associated light-harvesting complex II
GO:0016168molecular_functionchlorophyll binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45428.1.S1_at--976--4031Chr01:1778713..1778733 (21 bp)
CGATGGACCCATCCGTAATTTCGTA
LOC_Os01g04100
Os.45428.1.S1_at--884--9151NONE
TGCCCGACGATCGTGCCTCGTGGGA
NONE
Os.45428.1.S1_at--521--1971Chr01:1779554..1779578 (25 bp)
ACTGAGGATGGTTGACACGTATCTA
NONE
Os.45428.1.S1_at--580--1731Chr01:1779570..1779594 (25 bp)
ACGTATCTAATCACGGGTGGGCCCG
NONE
Os.45428.1.S1_at--205--10731Chr01:1779620..1779641 (22 bp)
TTGCTCGGCCAGTCGGACCATGAAA
NONE
Os.45428.1.S1_at--366--7091Chr01:1780841..1780865 (25 bp)
GTCAACGAGCATCATAGCTTTCTCT
NONE
Os.45428.1.S1_at--689--291Chr01:1780854..1780877 (24 bp)
ATAGCTTTCTCTCGCCTTGGAACTA
NONE
Os.45428.1.S1_at--653--4411NONE
GCCTTGGAACTATCTCGAGCCAGGG
NONE
Os.45428.1.S1_at--17--9431Chr01:1781869..1781893 (25 bp)
TCGTGCTCCTCGGATTGTGCACCGA
NONE
Os.45428.1.S1_at--373--4812Chr01:1781900..1781924 (25 bp)
GCTCGTCCTCTTCAAGATCGATCTA
NONE
Os.45428.1.S1_at--473--4271Chr01:1781940..1781964 (25 bp)
CCTGCAAGCTCAGATGTTTTTTCTT
NONE
Target Sequence 
CGATGGACCCATCCGTAATTTCGTAAAAATTCACGTCCCCAGCTGCTATTTCCCGGTGCATGGCTGTCCGAGATCACCGT
CGAGTCCTACCGGGTGCCCGACGATCGTGCCTCGTGGGACCCACCTGTCAGAGGAACTGAGGATGGTTGACACGTATCTA
ATCACGGGTGGGCCCGGTCGTGGACGTGGACCGGGCCAGGTTTGCTCGGCCAGTCGGACCATGAAAGGAAAAATACACAA
TGTCAACGAGCATCATAGCTTTCTCTCGCCTTGGAACTATCTCGAGCCAGGGGAGGTCGAGCTGGACGCTCTGCGGTGTC
GGCAGCTCTCGTGCTCCTCGGATTGTGCACCGAGGCCACGCTCGTCCTCTTCAAGATCGATCTACTACAATTATCAACAC
CTGCAAGCTCAGATGTTTTTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45428.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis