Browse Element(s) Details


Os.45671.1.S1_at

Description gb:NM_183830.1
DB_XREF= gi:34894787
GEN=P0537A05.21
TID=Os.45671.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45671 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0537A05.21 (P0537A05.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0537A05.21 (P0537A05.21), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g224504/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g22420NANA1+12586116..12592274transposon protein, putative, unclassified
LOC_Os01g22430Os.27350.1.A1_at6/111+12597767..12599726F-box domain containing protein
LOC_Os01g22440OsAffx.11157.1.S1_at3/111+12603727..12604185hypothetical protein
LOC_Os01g22450OsAffx.11158.1.S1_at8/111+12610507..12612419hypothetical protein
LOC_Os01g22450Os.45671.1.S1_x_at5/111+12610507..12612419hypothetical protein
LOC_Os01g22450Os.45671.1.S1_at4/111+12610507..12612419hypothetical protein
LOC_Os01g22480Os.33000.1.S1_x_at11/111+12618924..12623156F-box domain containing protein, expressed
LOC_Os01g22480Os.33000.1.S2_at10/111+12618924..12623156F-box domain containing protein, expressed
LOC_Os01g22490Os.28209.2.S1_at11/111+12628070..12628889ubiquitin, putative, expressed
LOC_Os01g22500Os.1574.1.S1_at11/111+12629067..12632493Bucentaur or craniofacial development family protein, expressed
LOC_Os01g22510OsAffx.1782.2.S1_at11/111+12633021..12636871Streptomyces cyclase/dehydrase family protein, expressed
LOC_Os01g22510Os.1505.1.S1_x_at9/111+12633021..12636871Streptomyces cyclase/dehydrase family protein, expressed
LOC_Os01g22520Os.1506.1.S1_at10/111+12637348..12640956Dihydrolipoyl dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os01g22520OsAffx.26764.1.S1_x_at1/111+12637348..12640956Dihydrolipoyl dehydrogenase, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45671.1.S1_at--408--1531Chr01:12610465..12610489 (25 bp)
AGCAGGGCGGCCTAGAGCAGAAATC
NONE
Os.45671.1.S1_at--790--1071Chr01:12610468..12610492 (25 bp)
AGGGCGGCCTAGAGCAGAAATCCAG
NONE
Os.45671.1.S1_at--121--4311Chr01:12610475..12610499 (25 bp)
CCTAGAGCAGAAATCCAGGAGGCGA
NONE
Os.45671.1.S1_at--703--6971Chr01:12610621..12610645 (25 bp)
GTACCAGAGAAGAGGTCTCAGGCAA
LOC_Os01g22450
Os.45671.1.S1_at--801--5351Chr01:12610629..12610653 (25 bp)
GAAGAGGTCTCAGGCAACGGCGGCC
LOC_Os01g22450
Os.45671.1.S1_at--916--3251Chr01:12610643..12610667 (25 bp)
CAACGGCGGCCTCGAGATCCAACAG
LOC_Os01g22450
Os.45671.1.S1_at--426--8431Chr01:12610650..12610674 (25 bp)
GGCCTCGAGATCCAACAGCCGTGCT
LOC_Os01g22450
Os.45671.1.S1_at--673--331Chr01:12612426..12612450 (25 bp)
ATACATTTCTCAAATATGCATGCTG
NONE
Os.45671.1.S1_at--732--191Chr01:12612430..12612454 (25 bp)
ATTTCTCAAATATGCATGCTGTGTT
NONE
Os.45671.1.S1_at--81--4991Chr01:12612443..12612467 (25 bp)
GCATGCTGTGTTTCAACGTTTTGAG
NONE
Os.45671.1.S1_at--120--7411Chr01:12612450..12612474 (25 bp)
GTGTTTCAACGTTTTGAGCTTCCTG
NONE
Target Sequence 
AGCAGGGCGGCCTAGAGCAGAAATCCAGGAGGCGAGGGAGAGATGAACCCCACCAGGCGACCCCGGCGACGGGAGCGGAG
CCGAGCTGCCGAGGTCGAGCAGACCCTGCCGGAGGCCTGTGGAGGCACGGATGAAGCCACGGAGGGGGCTCGGGCCGTAC
CAGAGAAGAGGTCTCAGGCAACGGCGGCCTCGAGATCCAACAGCCGTGCTNGGCAGAGACATGGCCTGCGCCGTGATGCA
GAGGACAAACAGTNNNNNGNNCNNCNNNNNNNNCNNNNNNNTGTTCCAATATGTTAAATACAAATACATTTCTCAAATAT
GCATGCTGTGTTTCAACGTTTTGAGCTTCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45671.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis