Browse Element(s) Details


Os.45774.1.S1_at

Description gb:BP184627
DB_XREF= gi:32948055
DB_XREF=BP184627
TID=Os.45774.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45774 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0702D12.15 (P0702D12.15), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4095011/11transposon protein, putative, unclassified
LOC_Os01g1905011/11transposon protein, putative, unclassified
LOC_Os04g2858011/11transposon protein, putative, unclassified, expressed
LOC_Os04g5488011/11transposon protein, putative, unclassified
LOC_Os01g630309/11transposon protein, putative, unclassified
LOC_Os05g375409/11transposon protein, putative, unclassified
LOC_Os07g321101/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g40910OsAffx.12437.1.S1_at11/112+24783662..24784196hypothetical protein
LOC_Os02g40920Os.26886.1.S1_x_at7/112+24789250..24792587transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g40920Os.26886.3.S1_x_at4/112+24789250..24792587transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g40920OsAffx.16244.1.S1_x_at1/112+24789250..24792587transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g40930Os.26886.2.S1_s_at8/112+24795483..24798440transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g40930Os.26886.6.S1_s_at5/112+24795483..24798440transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g40930OsAffx.3425.1.S1_at1/112+24795483..24798440transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g40940OsAffx.31018.3.S1_x_at11/112+24801452..24805997hypothetical protein
LOC_Os02g40940OsAffx.31018.2.S1_x_at11/112+24801452..24805997hypothetical protein
LOC_Os02g40940Os.50578.1.S1_x_at7/112+24801452..24805997hypothetical protein
LOC_Os02g40950Os.45774.1.S1_at11/112+24806724..24809466transposon protein, putative, unclassified
LOC_Os02g41450Os.54416.1.S1_at6/112+24810863..24813949No apical meristem protein
LOC_Os02g41460NANA2+24824827..24826182expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45774.1.S1_at--553--10517Chr05:21895621..21895645 (25 bp)
TTCACAATCGAGGAGTTACAGACAT
LOC_Os05g37540
Os.45774.1.S1_at--205--6135Chr05:21895670..21895694 (25 bp)
GAGGTGGCTAAGATTGCTAACAAAG
LOC_Os05g37540
Os.45774.1.S1_at--856--1356Chr05:21895787..21895811 (25 bp)
AGAGAAGCTCCGAAGCGAGCAGCTA
LOC_Os05g37540
Os.45774.1.S1_at--495--1517Chr05:21895804..21895828 (25 bp)
AGCAGCTAGGCATAAATCAAGGTCT
LOC_Os05g37540
Os.45774.1.S1_at--929--3216Chr05:21895821..21895845 (25 bp)
CAAGGTCTACTGTATTGACTGAAGA
LOC_Os05g37540
Os.45774.1.S1_at--342--8136Chr05:21895876..21895900 (25 bp)
GGACAGTGAGTATGACGTGCCAAGT
LOC_Os05g37540
Os.45774.1.S1_at--462--10236Chr05:21895918..21895942 (25 bp)
TTTGACTGCTGATATACTTCCACCG
LOC_Os05g37540
Os.45774.1.S1_at--873--4736Chr05:21895925..21895949 (25 bp)
GCTGATATACTTCCACCGTTGAAAA
LOC_Os05g37540
Os.45774.1.S1_at--148--3316Chr05:21896132..21896156 (25 bp)
CACACATGCCACGAAGCTGGTCATA
LOC_Os05g37540
Os.45774.1.S1_at--613--4694Chr04:32428332..32428356 (25 bp)
GCTGGTCATAATTCGCGGACTTGCG
LOC_Os04g54880
Os.45774.1.S1_at--969--5675Chr04:32428349..32428373 (25 bp)
GACTTGCGGCCGGACATCTACGTAC
LOC_Os04g54880
Target Sequence 
TTCACAATCGAGGAGTTACAGACATGTAATGCTGAATAGGAAGACTGTGGAGGTGGCTAAGATTGCTAACAAAGATGTGC
AGACATTTAAGATGGCAATGANAGTCATGAATAAGCTTTTGGAGGACATGAAAAATCAGTTATCTTTGGATGATGGTGAC
AATAGTAGAGAAGCTCCGAAGCGAGCAGCTAGGCATAAATCAAGGTCTACTGTATTGACTGAAGATGGAAANGAAGANGT
TGGTGGAGGTGATGAGGACAGTGAGTATGACGTGCCAAGTGAGGACGAGGGTGGAAATTTGACTGCTGATATACTTCCAC
CGTTGAAAAAGANAAGCAGAGGAAGACCTAAGGTGAATAGGTATAAATCGGGTGGTGAGGTTGCCAGCCTGAAAAGAAGA
AAAGAAGTAGGGATTGAGAAGAAGAACACAACCAATGAGTGTGAGTCCNGTTGAAGAAGAAAACCAAGTCATTGATCATG
AGGATGAAGTGCCCTTTCCTCGTAGNTTTTGCCACACATGCCACGAAGCTGGTCATAATTCGCGGACTTGCGGCCGGACA
TCTACGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45774.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis