Browse Element(s) Details


Os.45878.1.S1_at

Description gb:AK112057.1
DB_XREF= gi:37988720
TID=Os.45878.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.45878 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) phospholipase-like protein (B1012D10.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-110-F09, full insert sequence.
FL= gb:AK112057.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2131011/11esterase/lipase/thioesterase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g21270OsAffx.11140.1.S1_at11/111+11862345..11864165hypothetical protein
LOC_Os01g21280Os.17805.1.S3_s_at11/111+11865489..11867693hypothetical protein
LOC_Os01g21290Os.40360.1.S1_at9/111+11869336..11872539hypothetical protein
LOC_Os01g21290Os.40855.5.S1_x_at8/111+11869336..11872539hypothetical protein
LOC_Os01g21290Os.40855.2.S1_x_at8/111+11869336..11872539hypothetical protein
LOC_Os01g21290Os.40360.1.S1_x_at6/111+11869336..11872539hypothetical protein
LOC_Os01g21290Os.40855.4.S1_x_at3/111+11869336..11872539hypothetical protein
LOC_Os01g21290Os.40855.4.S1_at1/111+11869336..11872539hypothetical protein
LOC_Os01g21300Os.57035.1.S1_at11/111+11880039..11884875Phospholipase, putative, expressed
LOC_Os01g21310Os.45878.1.S1_at11/111+11887890..11889916esterase/lipase/thioesterase family protein, putative, expressed
LOC_Os01g21320Os.5892.1.S1_s_at11/111+11889186..11891870UDP-D-glucuronate decarboxylase, putative, expressed
LOC_Os01g21320OsAffx.2049.2.S1_x_at6/111+11889186..11891870UDP-D-glucuronate decarboxylase, putative, expressed
LOC_Os01g21330NANA1+11892606..11893247hypothetical protein
LOC_Os01g21340OsAffx.23321.1.S1_at11/111+11899989..11900390hypothetical protein
LOC_Os01g21350NANA1+11912834..11914369hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45878.1.S1_at--295--511Chr01:11888953..11888977 (25 bp)
ATCGTCGCCTGGCTCAACGGGCGCA
LOC_Os01g21310
Os.45878.1.S1_at--648--5451Chr01:11889134..11889158 (25 bp)
GAACGCATCACCACTCGGAAATGTA
LOC_Os01g21310
Os.45878.1.S1_at--778--3371Chr01:11889142..11889166 (25 bp)
CACCACTCGGAAATGTAGCTTTGTA
LOC_Os01g21310
Os.45878.1.S1_at--310--2991Chr01:11889169..11889193 (25 bp)
AATGTAAAGATTAGAGGCTCCAGCC
LOC_Os01g21310
Os.45878.1.S1_at--279--4791Chr01:11889185..11889209 (25 bp)
GCTCCAGCCTGCCTAGAATGGTCAA
LOC_Os01g21310
Os.45878.1.S1_at--262--5291Chr01:11889200..11889224 (25 bp)
GAATGGTCAATAAGTGGCACAGTGT
LOC_Os01g21310
Os.45878.1.S1_at--1118--8231Chr01:11889215..11889239 (25 bp)
GGCACAGTGTGCATGACTTCGTGTA
LOC_Os01g21310
Os.45878.1.S1_at--59--4991Chr01:11889225..11889249 (25 bp)
GCATGACTTCGTGTATTATAGAGGT
LOC_Os01g21310
Os.45878.1.S1_at--1131--2751Chr01:11889260..11889284 (25 bp)
AAGACATATGCCAACTTGCCAAGTA
LOC_Os01g21310
Os.45878.1.S1_at--461--8751Chr01:11889291..11889315 (25 bp)
TGTATCACAAACCATTCCTTTTCCT
LOC_Os01g21310
Os.45878.1.S1_at--986--8731Chr01:11889364..11889388 (25 bp)
TGTAAGCAAGTGGAATGTTCTGTTC
LOC_Os01g21310
Target Sequence 
ATCGTCGCCTGGCTCAACGGGCGCAGCCGCACCTGGACGGTGGAGGACCGCCTGATGAAGATGATGGCGTCGCCGGACAG
GTTCATCCGCGGCGAGAGGGGCGGCGCCGCTGACGTCGACGGTGACGCCAAGCGCGGCCCTCCACGGCGGCGCGGCGGCT
GCTTCTCCGGGCTCGCCGGCCGAACGCATCACCACTCGGAAATGTAGCTTTGTAACAATGTAAAGATTAGAGGCTCCAGC
CTGCCTAGAATGGTCAATAAGTGGCACAGTGTGCATGACTTCGTGTATTATAGAGGTGTTAAGAGTCAAGACATATGCCA
ACTTGCCAAGTAATGTAATGTATCACAAACCATTCCTTTTCCTCCAANNNANNNNAAATTTGGTCAAAAAAAAGTTTAAA
AAGATGCTTCATGTAAGCAAGTGGAATGTTCTGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45878.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis