Browse Element(s) Details


Os.45884.1.S1_at

Description gb:AA752404
DB_XREF= gi:2799415
DB_XREF=96MJ0081
CLONE=96MJ0081
TID=Os.45884.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45884 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0459B04.10 (P0459B04.10), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g139801/11Glycosyl hydrolases family 16 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g13950OsAffx.8624.1.S1_s_at1/118+8349060..8354153transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g13950OsAffx.8624.1.S1_x_at1/118+8349060..8354153transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g13950OsAffx.30891.1.S1_x_at1/118+8349060..8354153transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g13960OsAffx.19542.3.S1_x_at2/118+8360777..8366475retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g13970Os.38395.1.S1_at9/118+8369304..8377150retrotransposon protein, putative, unclassified
LOC_Os08g13970Os.38395.4.S1_x_at9/118+8369304..8377150retrotransposon protein, putative, unclassified
LOC_Os08g13970Os.38395.3.S1_x_at8/118+8369304..8377150retrotransposon protein, putative, unclassified
LOC_Os08g13970Os.38395.2.S1_x_at7/118+8369304..8377150retrotransposon protein, putative, unclassified
LOC_Os08g13970Os.38395.5.S1_at2/118+8369304..8377150retrotransposon protein, putative, unclassified
LOC_Os08g13980OsAffx.29184.1.S1_at11/118+8378227..8379456Glycosyl hydrolases family 16 protein, expressed
LOC_Os08g13980Os.45884.1.S1_x_at1/118+8378227..8379456Glycosyl hydrolases family 16 protein, expressed
LOC_Os08g13980Os.45884.1.S1_at1/118+8378227..8379456Glycosyl hydrolases family 16 protein, expressed
LOC_Os08g13990Os.6596.1.S1_at1/118+8383043..8386420pentatricopeptide, putative, expressed
LOC_Os08g14000Os.48441.1.S1_at10/118+8387933..8391462Endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed
LOC_Os08g14010OsAffx.9664.1.S1_at1/118+8396530..8398375retrotransposon protein, putative, unclassified
LOC_Os08g14010Os.18665.1.S1_at1/118+8396530..8398375retrotransposon protein, putative, unclassified
LOC_Os08g14020OsAffx.18899.1.S1_at7/118+8399646..8403479Endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009664biological_processcell wall organization and biogenesis (sensu Magnoliophyta)
GO:0005618cellular_componentcell wall
GO:0016798molecular_functionhydrolase activity, acting on glycosyl bonds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45884.1.S1_at--92--4571Chr01:43403124..43403148 (25 bp)
GCGCGCCACCATGGATGGGATGGGA
NONE
Os.45884.1.S1_at--606--6251Chr01:43403142..43403166 (25 bp)
GATGGGAGTAGGTGATACTGATACC
NONE
Os.45884.1.S1_at--1160--10071Chr01:43403150..43403174 (25 bp)
TAGGTGATACTGATACCTGGAGCGC
NONE
Os.45884.1.S1_at--984--8831Chr01:43403154..43403178 (25 bp)
TGATACTGATACCTGGAGCGCGGCA
NONE
Os.45884.1.S1_at--723--6471Chr01:43403155..43403179 (25 bp)
GATACTGATACCTGGAGCGCGGCAG
NONE
Os.45884.1.S1_at--893--6171Chr01:43403190..43403214 (25 bp)
GAGGAAGGAGGCGACCCAGAACCTC
NONE
Os.45884.1.S1_at--3--8171Chr01:43403192..43403216 (25 bp)
GGAAGGAGGCGACCCAGAACCTCTT
NONE
Os.45884.1.S1_at--418--2911Chr01:43403194..43403218 (25 bp)
AAGGAGGCGACCCAGAACCTCTTCT
NONE
Os.45884.1.S1_at--449--991Chr01:43403195..43403219 (25 bp)
AGGAGGCGACCCAGAACCTCTTCTC
NONE
Os.45884.1.S1_at--106--8372Chr01:43403740..43403764 (25 bp)
GGCGGGCCGGCGTTGCGAGGCAGGA
NONE
Os.45884.1.S1_at--927--8431Chr01:43403831..43403855 (25 bp)
GGCCAGCTGCCTGTCTGCCCCGACA
NONE
Target Sequence 
GCGCGCCACCATGGATGGGATGGGAGTAGGTGATACTGATACCTGGAGCGCGGCAGCCCAGACGAGGAGGAAGGAGGCGA
CCCAGAACCTCTTCTCCTTCACCACCCTCCTCATCGGCGGCCGGCAAGCGGGGAGGAGGCCGGCGGGCCGGCGTTGCGAG
GCAGGAGAGGAGGTGCGGCAACCGGCGGAGGCGGCGGGAGCACAGGGGGAGGCGAAGGGGGAGCATGGGGAGGGCCAGCT
GCCTGTCTGCCCCGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45884.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis