Browse Element(s) Details


Os.45890.1.S1_at

Description gb:NM_189847.1
DB_XREF= gi:34906777
GEN=P0560B08.19
TID=Os.45890.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45890 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains EST C72520(E1770)~ranscription factor R18-like protein (P0560B08.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) contains EST C72520(E1770)~ranscription factor R18-like protein (P0560B08.19), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4276011/11SAP domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42740Os.31290.1.S1_at11/117+25589533..25591115expressed protein
LOC_Os07g42750Os.51867.1.S1_at10/117+25599947..25604818DDT domain containing protein, expressed
LOC_Os07g42760Os.45890.1.S1_at11/117+25610528..25614569SAP domain-containing protein, putative, expressed
LOC_Os07g42770Os.12643.3.S1_x_at11/117+25615470..25620127CDPK-related protein kinase, putative, expressed
LOC_Os07g42770Os.12643.1.S1_a_at11/117+25615470..25620127CDPK-related protein kinase, putative, expressed
LOC_Os07g42780OsAffx.28878.1.S1_at11/117+25625908..25626796hypothetical protein
LOC_Os07g42790OsAffx.16687.1.S1_at11/117+25631975..25632871hypothetical protein
LOC_Os07g42800Os.26773.1.S1_at10/117+25635025..25638199AT hook-containing MAR binding 1, putative, expressed
LOC_Os07g42810Os.26704.1.S1_a_at11/117+25639156..25644150Adaptor complexes medium subunit family protein, expressed
LOC_Os07g42810Os.26704.3.S1_at11/117+25639156..25644150Adaptor complexes medium subunit family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45890.1.S1_at--736--1351Chr07:25611101..25611125 (25 bp)
AGAGAGCCAATCGTCTTCCGCAAAA
LOC_Os07g42760
Os.45890.1.S1_at--822--10651Chr07:25611086..25611110 (25 bp)
TTCCGCAAAACAATTCGCTGGTGGT
LOC_Os07g42760
Os.45890.1.S1_at--333--7391Chr07:25611024..25611048 (25 bp)
GTGATCGCAGCACCAACAGAGCTAG
LOC_Os07g42760
Os.45890.1.S1_at--679--1611Chr07:25610984..25611008 (25 bp)
AGCTGATTCCCAGCAAAATCTCGCT
LOC_Os07g42760
Os.45890.1.S1_at--665--7531Chr07:25610958..25610982 (25 bp)
GTGGCAGCCATGCTCAATTCGGAGA
LOC_Os07g42760
Os.45890.1.S1_at--226--1531Chr07:25610874..25610898 (25 bp)
AGCAGTCTCCCTTTGAGATCGTGAG
LOC_Os07g42760
Os.45890.1.S1_at--939--1751Chr07:25610837..25610861 (25 bp)
ACCTCCATTCCGTGAAGTTGGCAAT
LOC_Os07g42760
Os.45890.1.S1_at--361--2631Chr07:25610805..25610829 (25 bp)
AACCTCACGCAGATGGCAGATCAAC
LOC_Os07g42760
Os.45890.1.S1_at--828--7851Chr07:25610758..25610782 (25 bp)
GGTTTCCAGCATCCAAATGCGGCAT
LOC_Os07g42760
Os.45890.1.S1_at--921--2511Chr07:25610625..25610649 (25 bp)
AACTTGGAGCGTCATTTGCACCATT
LOC_Os07g42760
Os.45890.1.S1_at--952--771Chr07:25610598..25610622 (25 bp)
ATGTGCCACAAACTGTATACCGTCC
LOC_Os07g42760
Target Sequence 
AGAGAGCCAATCGTCTTCCGCAAAACAATTCGCTGGTGGTCAGANCACGNNGACAAGTCGTGCCCNGCTNGATAGAAGTG
ATCGCAGCACCAACAGAGCTAGGATGAGAGAAAGGAAAGCTGATTCCCAGCAAAATCTCGCTGGTGGCAGCCATGCTCAA
TTCGGAGAAAGGAATGCAGGTTCAGGTTATGATATGCAGGCAAGTCATGGATATCTGGTTGGAGTGCAGCAGTCTCCCTT
TGAGATCGTGAGGCCCCAGAGGCCACCTCCATTCCGTGAAGTTGGCAATGCCTCGCAACCTCACGCAGATGGCAGATCAA
CGGCATGCCCACACCCTAGGATGGGTTTCCAGCATCCAAATGCGGCATTGGCTGGTTCGCATCCACCTGCTTATTATCTG
GGAAACACACCGAATCAATTTCCATCATTTGCATCACTCAATGTGCGACAAACTGTACACCACCATCCTCTGGATCAACT
TGGAGCGTCATTTGCACCATTCAATGTGCCACAAACTGTATACCGTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45890.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis