Browse Element(s) Details


Os.45892.1.S1_at

Description gb:AK111782.1
DB_XREF= gi:37988445
TID=Os.45892.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.45892 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative myb-related protein (P0421H07.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023084H22, full insert sequence.
FL= gb:AK111782.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5072011/11Myb-related protein Hv33, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g50680OsAffx.23738.1.S1_x_at11/111+29431731..29435982PA domain containing protein, expressed
LOC_Os01g50680OsAffx.17117.1.S1_x_at1/111+29431731..29435982PA domain containing protein, expressed
LOC_Os01g50690Os.50469.1.S1_x_at11/111+29436783..29446209expressed protein
LOC_Os01g50690Os.39477.1.S1_x_at9/111+29436783..29446209expressed protein
LOC_Os01g50700Os.3419.1.S1_a_at11/111+29446608..29451477Dehydrin family protein, expressed
LOC_Os01g50710OsAffx.21477.2.S1_at11/111+29457776..29458576hypothetical protein
LOC_Os01g50720Os.45892.1.S1_at11/111+29459046..29460756Myb-related protein Hv33, putative, expressed
LOC_Os01g50720Os.57514.1.S1_x_at1/111+29459046..29460756Myb-related protein Hv33, putative, expressed
LOC_Os01g50730Os.29800.1.S1_x_at11/111+29472540..29474953Poly polymerase central domain containing protein
LOC_Os01g50730OsAffx.21476.2.S1_s_at11/111+29472540..29474953Poly polymerase central domain containing protein
LOC_Os01g50730Os.29800.1.S2_x_at11/111+29472540..29474953Poly polymerase central domain containing protein
LOC_Os01g50730OsAffx.21476.1.S1_at1/111+29472540..29474953Poly polymerase central domain containing protein
LOC_Os01g50740NANA1+29475999..29476460hypothetical protein
LOC_Os01g50750Os.33605.1.S1_at11/111+29479576..29481671zinc finger family protein, putative, expressed
LOC_Os01g50750Os.33605.2.S1_x_at11/111+29479576..29481671zinc finger family protein, putative, expressed
LOC_Os01g50750Os.33605.2.S1_at11/111+29479576..29481671zinc finger family protein, putative, expressed
LOC_Os01g50760Os.12161.1.S1_at11/111+29485110..29489433Farnesyl pyrophosphate synthetase, putative, expressed
LOC_Os01g50760Os.52834.1.S1_at1/111+29485110..29489433Farnesyl pyrophosphate synthetase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009411biological_processresponse to UV
GO:0009699biological_processphenylpropanoid biosynthesis
GO:0010119biological_processregulation of stomatal movement
GO:0010214biological_processseed coat development
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016564molecular_functiontranscriptional repressor activity
GO:0016566molecular_functionspecific transcriptional repressor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45892.1.S1_at--574--4151Chr01:29459538..29459562 (25 bp)
CGCCGGAGGTGAACAATGCGCTCGA
LOC_Os01g50720
Os.45892.1.S1_at--836--1371Chr01:29459514..29459538 (25 bp)
AGAGCGAGCCGCTGCATTGGGCCAC
LOC_Os01g50720
Os.45892.1.S1_at--783--11Chr01:29459499..29459523 (25 bp)
ATTGGGCCACCGAGAGCAAGGTCGA
LOC_Os01g50720
Os.45892.1.S1_at--526--2891Chr01:29459482..29459506 (25 bp)
AAGGTCGAGCCTTTCGTGGGCTACG
LOC_Os01g50720
Os.45892.1.S1_at--798--5931Chr01:29459404..29459428 (25 bp)
GAGCAGGGCATGACACATTTCGACT
LOC_Os01g50720
Os.45892.1.S1_at--353--5691Chr01:29459383..29459407 (25 bp)
GACTTCGACGTCAGCCGGAGCATGG
LOC_Os01g50720
Os.45892.1.S1_at--832--8591Chr01:29459358..29459382 (25 bp)
TGGTCGGCGACTTCAACTTCGAGTA
LOC_Os01g50720
Os.45892.1.S1_at--782--1171Chr01:29459337..29459361 (25 bp)
AGTACTTCCGATGAGGTTCTTGTGA
LOC_Os01g50720
Os.45892.1.S1_at--1028--4371Chr01:29459281..29459305 (25 bp)
CCAAGGCATTTTACACAGAGGGCAT
LOC_Os01g50720
Os.45892.1.S1_at--1091--2131Chr01:29459267..29459291 (25 bp)
ACAGAGGGCATGACCAACCGGGAGA
LOC_Os01g50720
Os.45892.1.S1_at--451--3131Chr01:29459223..29459247 (25 bp)
AATTTTCACTAGTCCATACTCCTTA
LOC_Os01g50720
Target Sequence 
CGCCGGAGGTGAACAATGCGCTCGAGAGCGAGCCGCTGCATTGGGCCACCGAGAGCAAGGTCGAGCCTTTCGTGGGCTAC
GGCGAGGGGGACGCCATGGAGCACAAGTTCGGGCTGCCCTGCCATGGGCAGCAAGAGCAGGGCATGACACATTTCGACTT
CGACGTCAGCCGGAGCATGGTGGTCGGCGACTTCAACTTCGAGTACTTCCGATGAGGTTCTTGTGAATTAAGCCATTATC
GTATATACAATATTCTTCCAAGGCATTTTACACAGAGGGCATGACCAACCGGGAGAGTAGAGACTGTACTCTGTTAATTT
TCACTAGTCCATACTCCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45892.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis