Browse Element(s) Details


Os.45958.1.S1_at

Description gb:CR285328
DB_XREF= gi:44671894
DB_XREF=CR285328
CLONE=p533d09p3
TID=Os.45958.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45958 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Hypothetical protein (OJ1263H11.11), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0280011/11no apical meristem, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g02756Os.6004.1.S1_a_at10/113+1045101..10540181,3-beta-glucan synthase component bgs3, putative, expressed
LOC_Os03g02762Os.6004.2.S2_at11/113+1054495..1057604expressed protein
LOC_Os03g02762Os.6004.2.S1_at11/113+1054495..1057604expressed protein
LOC_Os03g02770Os.6004.3.S1_at11/113+1056223..1057599expressed protein
LOC_Os03g02780NANA3+1059144..1059692Histone H4, putative, expressed
LOC_Os03g02790OsAffx.24944.1.S1_at9/113+1060536..1064717hypothetical protein
LOC_Os03g02800Os.45958.1.S1_at11/113+1067507..1072044no apical meristem, putative, expressed
LOC_Os03g02820Os.54100.1.S1_at9/113+1077680..1081214expressed protein
LOC_Os03g02820Os.55630.1.S1_at1/113+1077680..1081214expressed protein
LOC_Os03g02830Os.23229.1.S1_at11/113+1081199..1084991LEM3 family/CDC50 family protein, expressed
LOC_Os03g02830Os.52782.1.S1_at1/113+1081199..1084991LEM3 family/CDC50 family protein, expressed
LOC_Os03g02840Os.18066.3.S1_x_at11/113+1087587..1091390Remorin, C-terminal region family protein, expressed
LOC_Os03g02840Os.18066.1.S1_a_at11/113+1087587..1091390Remorin, C-terminal region family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45958.1.S1_at--43--2371Chr03:1071496..1071520 (25 bp)
AAACCACAGTGAATGAGCTGCTGCA
LOC_Os03g02800
Os.45958.1.S1_at--221--4771Chr03:1071515..1071539 (25 bp)
GCTGCAGATTGTGTCACTCCTTTTA
LOC_Os03g02800
Os.45958.1.S1_at--629--3311Chr03:1071529..1071553 (25 bp)
CACTCCTTTTAGCACCGAAGCAAAT
LOC_Os03g02800
Os.45958.1.S1_at--273--2272Chr03:1071550..1071574 (25 bp)
AAATCAATGGCTGCCCTACTGAGCA
LOC_Os03g02800
Os.45958.1.S1_at--132--4551Chr03:1071562..1071586 (25 bp)
GCCCTACTGAGCAAGAGCTGGTCAA
LOC_Os03g02800
Os.45958.1.S1_at--726--5571Chr03:1071695..1071719 (25 bp)
GAAATGGACGTTTCTAACCTCCGCG
LOC_Os03g02800
Os.45958.1.S1_at--771--1991Chr03:1071732..1071756 (25 bp)
ACTCCAGCTGAGTGCGATCACTAAA
LOC_Os03g02800
Os.45958.1.S1_at--643--5631Chr03:1071784..1071808 (25 bp)
GACACTACTGTTATATAATCTGCTA
LOC_Os03g02800
Os.45958.1.S1_at--303--10171Chr03:1071807..1071831 (25 bp)
TATAACCTCAGTAGCGCGAGCCTAG
LOC_Os03g02800
Os.45958.1.S1_at--14--171Chr03:1071924..1071948 (25 bp)
ATTATTTGTTCGTCGTCCATTCTAA
LOC_Os03g02800
Os.45958.1.S1_at--1008--7251Chr03:1071938..1071962 (25 bp)
GTCCATTCTAAGTCTAACCCTGTTG
LOC_Os03g02800
Target Sequence 
AAACCACAGTGAATGAGCTGCTGCAGATTGTGTCACTCCTTTTAGCACCGAAGCAAATCAATGGCTGCCCTACTGAGCAA
GAGCTGGTCAAGAAGAAGGCGAAAGAAGTGATGAAGCCGGGATGGGGTCGTGAAGGGAGCAACAAATTGTGGNTTCCGCT
NCTCCAAAGGGAAGGGCATTTCCAGCATGTTTTTGAGTGGGAAATGGACGTTTCTAACCTCCGCGTTGGCCATCAGCACT
CCAGCTGAGTGCGATCACTAAAAGGTNCTTTTCCATGACTGTCAATTAATGACACTACTGTTATATAATCTGCTATAACC
TCAGTAGCGCGAGCCTAGNNAGTGCATGANAGAGANAGGTTAACNATTAATTANACTGTCTTCGTGTNCTCTGTTATTAA
CTGGTGTATAACTGGAGAATGTATGTCAATTAATTATTATTTGTTCGTCGTCCATTCTAAGTCTAACCCTGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45958.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis