Browse Element(s) Details


Os.46.1.A1_at

Description gb:CR291026
DB_XREF= gi:44677592
DB_XREF=CR291026
CLONE=p897e11p3
TID=Os.46.1
CNT=11
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.46 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4205011/11Importin-beta N-terminal domain containing protein, expressed
LOC_Os01g170608/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g42020Os.24860.1.S1_at11/113+23296127..23301619Calcium-transporting ATPase 2, plasma membrane-type, putative, expressed
LOC_Os03g42030OsAffx.13297.1.S1_at11/113+23305796..23306107hypothetical protein
LOC_Os03g42040OsAffx.13298.1.S1_at11/113+23307741..23314974HEAT repeat family protein
LOC_Os03g42050Os.46.1.A1_at11/113+23323285..23336850Importin-beta N-terminal domain containing protein, expressed
LOC_Os03g42050OsAffx.13299.1.S1_x_at10/113+23323285..23336850Importin-beta N-terminal domain containing protein, expressed
LOC_Os03g42050OsAffx.13299.1.S1_at8/113+23323285..23336850Importin-beta N-terminal domain containing protein, expressed
LOC_Os03g42060OsAffx.25481.1.S1_at10/113+23341345..23341987hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0000059biological_processprotein import into nucleus, docking
GO:0005634cellular_componentnucleus
GO:0005643cellular_componentnuclear pore
GO:0005737cellular_componentcytoplasm
GO:0008565molecular_functionprotein transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46.1.A1_at--482--5852Chr03:23323710..23323734 (25 bp)
GACCAGCTGCTTTAAGGTGGTGCAC
LOC_Os03g42050
Os.46.1.A1_at--1033--7732Chr03:23323695..23323719 (25 bp)
GGTGGTGCACTCATGTGCTGTAAAT
LOC_Os03g42050
Os.46.1.A1_at--319--4732Chr03:23323679..23323703 (25 bp)
GCTGTAAATACTTAGCTTAGCTTCG
LOC_Os03g42050
Os.46.1.A1_at--286--10412Chr03:23323663..23323687 (25 bp)
TTAGCTTCGTTTTAGGAACCACCAT
LOC_Os03g42050
Os.46.1.A1_at--350--2891Chr03:23323580..23323604 (25 bp)
AAGGGTTCTCCTGCTGCATGTGGCG
LOC_Os03g42050
Os.46.1.A1_at--1034--9032Chr03:23323549..23323573 (25 bp)
TGCAGTTGTTGATCTCTTACCTTGT
LOC_Os03g42050
Os.46.1.A1_at--39--452Chr03:23323538..23323562 (25 bp)
ATCTCTTACCTTGTCGTGTACTAGA
LOC_Os03g42050
Os.46.1.A1_at--576--311Chr03:23323470..23323494 (25 bp)
ATACCTTAGTGTTAATTCCTTCTCT
LOC_Os03g42050
Os.46.1.A1_at--890--7352Chr03:23323421..23323445 (25 bp)
GTGAAAGCCTGTGATCGCTGTTTCC
LOC_Os03g42050
Os.46.1.A1_at--553--8851Chr03:23323410..23323434 (25 bp)
TGATCGCTGTTTCCCCGAGTTGTTA
LOC_Os03g42050
Os.46.1.A1_at--1153--5072Chr03:23323377..23323401 (25 bp)
GCAGCCATCGCTCAAAATATAATTC
LOC_Os03g42050
Target Sequence 
GACCAGCTGCTTTAAGGTGGTGCACTCATGTGCTGTAAATACTTAGCTTAGCTTCGTTTTAGGAACCACCATTCCCGTGG
GGGGAAAGTTATGGTTTAACTCAGTTTGGTTTGGATTGGCTGAAAGATGNAAGGGTTCTCCTGCTGCATGTGGCGGCAAA
ATGCAGTTGTTGATCTCTTACCTTGTCGTGTACTAGAATGGCTGAGTGCAGGGGATTGACTTTTTTCTTCTTCTCTTTTT
ATACCTTAGTGTTAATTCCTTCTCTTTTTGCTTGTACAGCAATATTCATGTGAAAGCCTGTGATCGCTGTTTCCCCGAGT
TGTTAGGGGGAAAGCAGCCATCGCTCAAAATATAATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis