Browse Element(s) Details


Os.46037.1.S1_x_at

Description gb:NM_186081.1
DB_XREF= gi:34899247
GEN=P0450A04.14
TID=Os.46037.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46037 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains EST D24826(R2621)~unknown protein (P0450A04.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) contains EST D24826(R2621)~unknown protein (P0450A04.14), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4707011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g47030Os.45962.1.S1_a_at11/117+28099592..28107839expressed protein
LOC_Os07g47040Os.8736.1.S1_at11/117+28116394..28123660expressed protein
LOC_Os07g47040OsAffx.560.1.S1_at11/117+28116394..28123660expressed protein
LOC_Os07g47040Os.8736.2.S1_x_at11/117+28116394..28123660expressed protein
LOC_Os07g47040Os.8736.1.S1_a_at11/117+28116394..28123660expressed protein
LOC_Os07g47050NANA7+28124725..28125967retrotransposon protein, putative, unclassified
LOC_Os07g47060OsAffx.16740.1.S1_at11/117+28128030..28128670hypothetical protein
LOC_Os07g47070OsAffx.16741.1.S1_s_at11/117+28132446..28138961expressed protein
LOC_Os07g47070Os.46037.1.S1_x_at11/117+28132446..28138961expressed protein
LOC_Os07g47080OsAffx.28938.1.S1_at11/117+28140917..28142084hypothetical protein
LOC_Os07g47090Os.35203.1.S1_at11/117+28144805..28147907kinase interacting family protein, putative, expressed
LOC_Os07g47100Os.4700.1.S1_at11/117+28162730..28167616sodium/hydrogen exchanger 3 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46037.1.S1_x_at--7--771Chr07:28133997..28134021 (25 bp)
ATGTCGTCCGTTGGATATCACGCAT
LOC_Os07g47070
Os.46037.1.S1_x_at--323--8052Chr07:28135542..28135566 (25 bp)
GGAGATAACCATGCGTTCCACAATG
LOC_Os07g47070
Os.46037.1.S1_x_at--652--6411Chr07:28135576..28135600 (25 bp)
GATCTCTAGTACATCTGGTTTCCTT
LOC_Os07g47070
Os.46037.1.S1_x_at--518--691Chr07:28135612..28135636 (25 bp)
ATGAGAAGCCTTTTTCTGTCGCTGC
LOC_Os07g47070
Os.46037.1.S1_x_at--47--4791Chr07:28135632..28135656 (25 bp)
GCTGCCATTCCTATTGTGTCAGTTA
LOC_Os07g47070
Os.46037.1.S1_x_at--836--7411Chr07:28135689..28135713 (25 bp)
GTGTTCCGTCAACAAGATGCGGCCA
LOC_Os07g47070
Os.46037.1.S1_x_at--1066--991Chr07:28135784..28135808 (25 bp)
AGGATCTCTGGCAGCATTTTCTGTT
LOC_Os07g47070
Os.46037.1.S1_x_at--335--6731Chr07:28135806..28135830 (25 bp)
GTTAATACAACTGCGGAACTGCCAA
LOC_Os07g47070
Os.46037.1.S1_x_at--1022--811Chr07:28135902..28135926 (25 bp)
ATGGAGCCAAGCCTGTTAGTTCGTG
LOC_Os07g47070
Os.46037.1.S1_x_at--107--10051Chr07:28135918..28136280 (25 bp)
TAGTTCGTGGCCGTGTAACTCACTA
LOC_Os07g47070
Os.46037.1.S1_x_at--526--2031Chr07:28136277..28136301 (25 bp)
ACTATCTCAGATTGTGCAGCATTTG
LOC_Os07g47070
Target Sequence 
ATGTCGTCCGTTGGATATCACGCATCTAAAGAATGTTGGTGCTGTTCATGGAGATAACCATGCGTTCCACAATGAGTTAC
GTAGATCTCTAGTACATCTGGTTTCCTTTCAACCAGGAAATGAGAAGCCTTTTTCTGTCGCTGCCATTCCTATTGTGTCA
GTTAATGGATTTTGCTATATGATATCACATAGCAAAGTGTTCCGTCAACAAGATGCGGCCAACTGGCAACATAGAGTCAT
TTTTCCTGATGAAATTATAGTGATGCTTAGAATAGAAGATGTAATAATACAAGGATCTCTGGCAGCATTTTCTGTTAATA
CAACTGCGGAACTGCCAAATCCAGTAAAATTCAGTGAACAACAGGTTTCACACAATCAGGAAGTTCATACAGTTAATTTT
GAAGGGGTGATGGAGCCAAGCCTGTTAGTTCGTGGCCGTGTAACTCACTATCTCAGATTGTGCAGCATTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46037.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis