Browse Element(s) Details


Os.46071.1.S1_x_at

Description gb:AK111521.1
DB_XREF= gi:37988184
TID=Os.46071.1
CNT=79
FEA=FLmRNA
TIER=FL+Stack
STK=32
UG=Os.46071 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023099N07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002M10, full insert sequence.
FL= gb:AK111521.1 gb:AK111792.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2318011/11RNA binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g23130Os.27691.1.S1_x_at4/1112+13078495..13082675retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g23140Os.27691.2.S1_x_at3/1112+13082928..13084114retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g23140Os.27691.1.S1_x_at2/1112+13082928..13084114retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g23150OsAffx.7670.1.S1_at6/1112+13092756..13093942P-nitrophenylphosphatase, putative, expressed
LOC_Os12g23160OsAffx.31842.1.S1_at11/1112+13096187..13096750hypothetical protein
LOC_Os12g23170Os.4956.1.S1_at11/1112+13096990..13100112Glycosyl hydrolase family 1 protein, expressed
LOC_Os12g23180Os.46071.1.S1_at11/1112+13101008..13103633RNA binding protein, putative, expressed
LOC_Os12g23180Os.46071.1.S1_x_at11/1112+13101008..13103633RNA binding protein, putative, expressed
LOC_Os12g23190Os.53270.1.S1_at9/1112+13108419..13111498tyrosine specific protein phosphatase family protein, putative, expressed
LOC_Os12g23200Os.51583.1.S1_at11/1112+13112478..13114689Photosystem I reaction center subunit XI, chloroplast precursor, putative, expressed
LOC_Os12g23210OsAffx.31843.1.S1_at11/1112+13117755..13118518hypothetical protein
LOC_Os12g23220NANA12+13127442..13130404retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0003729molecular_functionmRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46071.1.S1_x_at--714--1731Chr12:13102857..13102881 (25 bp)
ACCTTCGACGGTCTAGCACGGGCGT
LOC_Os12g23180
Os.46071.1.S1_x_at--167--3651Chr12:13102859..13102883 (25 bp)
CTTCGACGGTCTAGCACGGGCGTGC
LOC_Os12g23180
Os.46071.1.S1_x_at--994--9531Chr12:13102868..13102890 (23 bp)
TCTAGCACGGGCGTGCGCCAAGGCT
LOC_Os12g23180
Os.46071.1.S1_x_at--91--4091Chr12:13103003..13103027 (25 bp)
CGAGCCGGAGATCGTCCACTACAAC
LOC_Os12g23180
Os.46071.1.S1_x_at--774--3311Chr12:13103019..13103043 (25 bp)
CACTACAACCCCAAGGACTTCGATT
LOC_Os12g23180
Os.46071.1.S1_x_at--832--9851Chr12:13103022..13103046 (25 bp)
TACAACCCCAAGGACTTCGATTTCG
LOC_Os12g23180
Os.46071.1.S1_x_at--178--4231Chr12:13103309..13103333 (25 bp)
CCGACTTCACCACCGACGACATGAT
LOC_Os12g23180
Os.46071.1.S1_x_at--574--5791Chr12:13103323..13103347 (25 bp)
GACGACATGATCCTCGGCAAGAAGC
LOC_Os12g23180
Os.46071.1.S1_x_at--645--1591Chr12:13103345..13103369 (25 bp)
AGCTCGTCAGCGTCTGAGCTCGCCG
LOC_Os12g23180
Os.46071.1.S1_x_at--712--6471Chr12:13103514..13103538 (25 bp)
GATACACGCGTACAGGCGTAAGCTG
LOC_Os12g23180
Os.46071.1.S1_x_at--595--9851Chr12:13103516..13103540 (25 bp)
TACACGCGTACAGGCGTAAGCTGCA
LOC_Os12g23180
Target Sequence 
ACCTTCGACGGTCTAGCACGGGCGTGCGCCAAGGCTGGAGGATTCCCCGAGCCGGAGATCGTCCACTACAACCCCAAGGA
CTTCGATTTCGGGAAGAAGAAGGCCTTCCCCTTCAGAGACCAGCATTTCTTCGCGTCAATCGAGAAGGCGACCTTGGAGC
TCGGGTGGAAGCCGGAGTACGACCTGGTGGAGGGCCTCACCGACTCGTACAACCTCGACTTCGGCCGCGGCACGTTCAGG
AAGGCGGCCGACTTCACCACCGACGACATGATCCTCGGCAAGAAGCTCGTCAGCGTCTGAGCTCGCCGCCGTCCTTTCCG
GACAGCGGACGGATTGCTTGCTGCGCGACGCGAGCGGCTGACCGGCCGGGCCGCCATGGCCGGTGGGCAGGAGCAAGCGG
AGACGGTTTCAGTTTTGTTATCAACGCTGGTTTGGTACAATATGGATAGTTGGATACACGCGTACAGGCGTAAGCTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46071.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis