Browse Element(s) Details


Os.46085.1.S1_x_at

Description gb:NM_194861.1
DB_XREF= gi:37531081
TID=Os.46085.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46085 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative proline-rich protein (OSJNBa0031A07.9), mRNA.
PROD=putative proline-rich protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0593011/11proline-rich protein, putative, expressed
LOC_Os10g058605/11proline-rich protein, putative
LOC_Os10g058205/11proline-rich protein, putative, expressed
LOC_Os10g058404/11expressed protein
LOC_Os10g059102/11proline-rich protein, putative, expressed
LOC_Os10g058802/11proline-rich protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g05870OsAffx.20939.1.S1_at3/1110+2946019..2950247hypothetical protein
LOC_Os10g05870OsAffx.10222.1.S1_x_at1/1110+2946019..2950247hypothetical protein
LOC_Os10g05870Os.45902.1.A1_x_at1/1110+2946019..2950247hypothetical protein
LOC_Os10g05870Os.56372.1.S1_at1/1110+2946019..2950247hypothetical protein
LOC_Os10g05870Os.50889.1.S1_at1/1110+2946019..2950247hypothetical protein
LOC_Os10g05870OsAffx.8356.1.S1_x_at1/1110+2946019..2950247hypothetical protein
LOC_Os10g05880Os.21524.2.S1_x_at5/1110+2951068..2951869proline-rich protein, putative
LOC_Os10g05880Os.46085.1.S1_x_at2/1110+2951068..2951869proline-rich protein, putative
LOC_Os10g05890Os.48033.1.S1_at10/1110+2954960..2956626hypothetical protein
LOC_Os10g05890Os.52296.1.S1_at1/1110+2954960..2956626hypothetical protein
LOC_Os10g05900Os.51947.1.S1_at11/1110+2962570..2965653expressed protein
LOC_Os10g05900Os.49942.1.S1_at5/1110+2962570..2965653expressed protein
LOC_Os10g05910Os.46085.1.S1_x_at2/1110+2965911..2966719proline-rich protein, putative, expressed
LOC_Os10g05910Os.21524.2.S1_x_at1/1110+2965911..2966719proline-rich protein, putative, expressed
LOC_Os10g05930Os.46085.1.S1_x_at11/1110+2975065..2976037proline-rich protein, putative, expressed
LOC_Os10g05930Os.21524.2.S1_x_at3/1110+2975065..2976037proline-rich protein, putative, expressed
LOC_Os10g05940OsAffx.20746.1.S1_at11/1110+2979518..2980873expressed protein
LOC_Os10g05950Os.8638.1.S1_s_at11/1110+2983492..2985384proline-rich protein, putative, expressed
LOC_Os10g05950Os.8638.1.S1_at11/1110+2983492..2985384proline-rich protein, putative, expressed
LOC_Os10g05960OsAffx.18150.1.S1_at11/1110+2987757..2988335hypothetical protein
LOC_Os10g05970Os.37820.1.S1_x_at11/1110+2996967..2998098proline-rich protein, putative, expressed
LOC_Os10g05970Os.8385.1.S1_s_at11/1110+2996967..2998098proline-rich protein, putative, expressed
LOC_Os10g05970Os.8638.1.S1_s_at1/1110+2996967..2998098proline-rich protein, putative, expressed
LOC_Os10g05980Os.11398.1.S1_at11/1110+3001037..3002195proline-rich protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009664biological_processcell wall organization and biogenesis (sensu Magnoliophyta)
GO:0005618cellular_componentcell wall
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46085.1.S1_x_at--402--7171Chr10:2975212..2975236 (25 bp)
GTCGGCTTGGCCAAGTGCGGTGGCT
LOC_Os10g05930
Os.46085.1.S1_x_at--65--7731Chr10:2975230..2975254 (25 bp)
GGTGGCTGCTCCAGGAAGAACATGA
LOC_Os10g05930
Os.46085.1.S1_x_at--672--2493Chr10:2975248..2975272 (25 bp)
AACATGAAGGCGCAGGATGCTTTCA
LOC_Os10g05930
Os.46085.1.S1_x_at--843--3476Chr10:2975260..2975387 (25 bp)
CAGGATGCTTTCAAGGGTCTCCAGG
LOC_Os10g05930
Os.46085.1.S1_x_at--229--7274Chr10:2975563..2975587 (25 bp)
GTCCAAGATCGTGCCGCTGTCGTCA
LOC_Os10g05930
Os.46085.1.S1_x_at--316--7294Chr10:2975573..2975597 (25 bp)
GTGCCGCTGTCGTCAACAACGGACA
LOC_Os10g05930
Os.46085.1.S1_x_at--1078--8695Chr10:2975580..2975604 (25 bp)
TGTCGTCAACAACGGACAACGGCGG
LOC_Os10g05930
Os.46085.1.S1_x_at--1162--7372Chr10:2975604..2975628 (25 bp)
GTGATAAGGCTAACACCTTCGTCGC
LOC_Os10g05930
Os.46085.1.S1_x_at--255--4011Chr10:2975629..2975653 (25 bp)
CGTCGCCGGCAAGAGGATGCGCTAC
LOC_Os10g05930
Os.46085.1.S1_x_at--387--1331Chr10:2975640..2975664 (25 bp)
AGAGGATGCGCTACTCGTCGTCGGC
LOC_Os10g05930
Os.46085.1.S1_x_at--608--9451Chr10:2975660..2975684 (25 bp)
TCGGCGGAGTGCAACTCGGCGTTCC
LOC_Os10g05930
Target Sequence 
GTCGGCTTGGCCAAGTGCGGTGGCTGCTCCAGGAAGAACATGAAGGCGCAGGATGCTTTCAAGGGTCTCCAGGTGGCGAT
CAAGTGCAGGAACGGCGACGGCGAGTACGAGAGCAAGGCCNGTCGGCGACCTCGACGGCGACGGCGCCTTCAGCGTGCCC
CTCGCCGCCGACGACCTNCACGGCGCCGCCGACTGCTTTGCGCAGCTGCACAGCGCGGAGAGCAGCACGCCGTGCCCCGG
GCAGGAGCCGTCCAAGATCGTGCCGCTGTCGTCAACAACGGACAACGGCGGTGATAAGGCTAACACCTTCGTCGCCGTCG
CCGGCAAGAGGATGCGCTACTCGTCGTCGGCGGAGTGCAACTCGGCGTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46085.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis