Browse Element(s) Details


Os.46107.1.S2_x_at

Description gb:AK120405.1
DB_XREF= gi:37990028
TID=Os.46107.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.46107 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013135P04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013088P09, full insert sequence.
FL= gb:AK061676.1 gb:AK120405.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3225011/11retrotransposon, putative, centromere-specific, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g32190OsAffx.24531.1.S1_at11/112+19010914..19014434hypothetical protein
LOC_Os02g32200Os.18269.1.S2_at11/112+19015774..19018851thioesterase family protein, putative, expressed
LOC_Os02g32200Os.18269.1.S1_at11/112+19015774..19018851thioesterase family protein, putative, expressed
LOC_Os02g32210Os.55268.1.S1_at10/112+19020648..19026474hypothetical protein
LOC_Os02g32210OsAffx.24532.1.S1_at10/112+19020648..19026474hypothetical protein
LOC_Os02g32210Os.57515.1.A1_at1/112+19020648..19026474hypothetical protein
LOC_Os02g32210Os.57189.1.S1_at1/112+19020648..19026474hypothetical protein
LOC_Os02g32220Os.54381.1.S1_at2/112+19028471..19029896retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g32230Os.33351.1.S1_at11/112+19030122..19035145retrotransposon protein, putative, unclassified, expressed
LOC_Os02g32230Os.54015.1.S1_at11/112+19030122..19035145retrotransposon protein, putative, unclassified, expressed
LOC_Os02g32240NANA2+19035360..19035665hypothetical protein
LOC_Os02g32250Os.46107.1.S2_at11/112+19038941..19044888retrotransposon, putative, centromere-specific, expressed
LOC_Os02g32250Os.46107.1.S2_x_at11/112+19038941..19044888retrotransposon, putative, centromere-specific, expressed
LOC_Os02g32250Os.46107.1.S1_s_at11/112+19038941..19044888retrotransposon, putative, centromere-specific, expressed
LOC_Os02g32250Os.46107.1.S2_a_at11/112+19038941..19044888retrotransposon, putative, centromere-specific, expressed
LOC_Os02g32270OsAffx.2826.1.S1_at11/112+19048045..19048578hypothetical protein
LOC_Os02g32280OsAffx.24534.1.S1_at11/112+19053005..19057488expressed protein
LOC_Os02g32290Os.49595.1.S1_at10/112+19061470..19066480expressed protein
LOC_Os02g32300OsAffx.20524.1.S1_at6/112+19067640..19071968retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46107.1.S2_x_at--248--6931Chr02:19039254..19039278 (25 bp)
GTATGGGAGCTTTTTGACTGGAGAT
LOC_Os02g32250
Os.46107.1.S2_x_at--677--10251Chr02:19039242..19039266 (25 bp)
TTTGACTGGAGATGAGACCGTTGAT
LOC_Os02g32250
Os.46107.1.S2_x_at--700--10491Chr02:19039216..19039240 (25 bp)
TTAAGAATGGCCTCACATGTTGCAT
LOC_Os02g32250
Os.46107.1.S2_x_at--455--9635Chr10:7037942..7037964 (22 bp)
TCAGGTATCGATTTTCACAGGGAAT
NONE
Os.46107.1.S2_x_at--1151--6533Chr04:7327291..7327315 (25 bp)
GATTTTCACAGGGAATGTGTGTGCT
NONE
Os.46107.1.S2_x_at--476--6812Chr10:4282675..4282696 (22 bp)
GTTTAGGTTCATCCAAGGGCACGAA
NONE
Os.46107.1.S2_x_at--1102--10072Chr10:4282675..4282698 (24 bp)
TAGGTTCATCCAAGGGCACGAAGCT
NONE
Os.46107.1.S2_x_at--638--1072Chr10:8658947..8659452 (25 bp)
AGGGCACGAAGCTATGGATAAGGAA
NONE
Os.46107.1.S2_x_at--1118--5536Chr08:10406733..10407164 (25 bp)
GAAAGGATAGAGAGGTTTCACCGAT
NONE
Os.46107.1.S2_x_at--904--6472Chr06:19421758..19422184 (25 bp)
GATAGAGAGGTTTCACCGATAAGAA
NONE
Os.46107.1.S2_x_at--484--7851Chr02:19038948..19038971 (24 bp)
GGTTTCACCGATAAGAAATAGTGTT
LOC_Os02g32250
Target Sequence 
GTATGGGAGCTTTTTGACTGGAGATGAGACCGTTGATNTTAAGAATGGCCTCACATGTTGCATNTACAATGTGATTTCAA
TGCTCNCCATGGAGATGGCCAGAGTTTCGNCCGTGAACACAAAGACAACAAGATATTNGTNGGTATTTNTTANGATCACA
GATAAATNTGCAAGCGTACAGAATATACCGATGTAGCATTTCNCCCGGGNGTATTNTCAGGTATCGATTTTCACAGGGAA
TGTGTGTGCTAANTCCGGTTTAGGTTCATCCAAGGGCACGAAGCTATGGATAAGGAAAGGATAGAGAGGTTTCACCGATA
AGAAATAGTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46107.1.S2_x_at     

Putative homologies in rice

Putative homologies in arabidopsis