Browse Element(s) Details


Os.4618.1.S1_at

Description gb:AK062310.1
DB_XREF= gi:32972328
TID=Os.4618.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4618 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0455H0310.28 (P0455H0310.28), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-101-B06, full insert sequence.
FL= gb:AK062310.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3267011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g32630NANA1+18214350..18219792retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g32640Os.29827.1.S1_at11/111+18221758..18225456F-box domain containing protein, expressed
LOC_Os01g32640Os.29827.1.S1_x_at11/111+18221758..18225456F-box domain containing protein, expressed
LOC_Os01g32650NANA1+18229912..18230493hypothetical protein
LOC_Os01g32660Os.2619.1.S1_at11/111+18231640..18236983Protein kinase domain containing protein, expressed
LOC_Os01g32670Os.4618.1.S1_at11/111+18238384..18238990expressed protein
LOC_Os01g32680OsAffx.2133.1.S1_at11/111+18248999..18249478retrotransposon protein, putative, unclassified
LOC_Os01g32700OsAffx.29264.2.S1_at11/111+18254535..18256551transposon protein, putative, unclassified
LOC_Os01g32700OsAffx.17743.1.S1_at1/111+18254535..18256551transposon protein, putative, unclassified
LOC_Os01g32710OsAffx.2134.1.S1_at10/111+18259699..18261206hydroxyproline-rich glycoprotein family protein, putative
LOC_Os01g32720Os.17016.1.S1_at10/111+18262735..18273925expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4618.1.S1_at--620--2931Chr01:18238654..18238678 (25 bp)
AAGGCGTACTACCTCGAACTCGAAG
LOC_Os01g32670
Os.4618.1.S1_at--112--4271Chr01:18238629..18238653 (25 bp)
CCGGCGCTGATGATGCTGTCGATGA
LOC_Os01g32670
Os.4618.1.S1_at--468--4731Chr01:18238615..18238639 (25 bp)
GCTGTCGATGAGCTAGGATCGCTAT
LOC_Os01g32670
Os.4618.1.S1_at--1017--511Chr01:18238598..18238622 (25 bp)
ATCGCTATGAGTGACATGGATTCGT
LOC_Os01g32670
Os.4618.1.S1_at--177--851Chr01:18238565..18238589 (25 bp)
ATGGCATGCATCACCGGAACGGCGG
LOC_Os01g32670
Os.4618.1.S1_at--472--4411Chr01:18238523..18238547 (25 bp)
GCCACCGTCGATAGGAGAATTGCAG
LOC_Os01g32670
Os.4618.1.S1_at--235--1631Chr01:18238500..18238524 (25 bp)
AGCGGCGGCGCTAATTGACATGGCA
LOC_Os01g32670
Os.4618.1.S1_at--976--4831Chr01:18238491..18238515 (25 bp)
GCTAATTGACATGGCAGTTTCCTGT
LOC_Os01g32670
Os.4618.1.S1_at--435--6851Chr01:18238475..18238499 (25 bp)
GTTTCCTGTTTTGGTGTGTATGTGT
LOC_Os01g32670
Os.4618.1.S1_at--265--2571Chr01:18238436..18238460 (25 bp)
AACTGTGTTGTGAATGTGGATCTTT
LOC_Os01g32670
Os.4618.1.S1_at--781--5231Chr01:18238393..18238417 (25 bp)
GAATAATTGAACTTTCTCGCCACAA
LOC_Os01g32670
Target Sequence 
AAGGCGTACTACCTCGAACTCGAAGCCGGCGCTGATGATGCTGTCGATGAGCTAGGATCGCTATGAGTGACATGGATTCG
TGGAGGCAGATGGCATGCATCACCGGAACGGCGGCACGGCGGCATGCAGCTGCCACCGTCGATAGGAGAATTGCAGCGGC
GGCGCTAATTGACATGGCAGTTTCCTGTTTTGGTGTGTATGTGTGTGAGTGTGAGTGAAACTGTGTTGTGAATGTGGATC
TTTTTAGTTTGGTGTTTCGTTGAATAATTGAACTTTCTCGCCACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4618.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis