Browse Element(s) Details


Os.4624.1.S1_at

Description gb:AK121537.1
DB_XREF= gi:37991160
TID=Os.4624.1
CNT=8
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.4624 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033031F04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033031F04, full insert sequence.
FL= gb:AK121537.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0318011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g03160OsAffx.16062.1.S1_at11/117+1226821..1236455Phospholipase A-2-activating protein, putative, expressed
LOC_Os07g03160OsAffx.16061.1.S1_at11/117+1226821..1236455Phospholipase A-2-activating protein, putative, expressed
LOC_Os07g03160Os.5896.1.S1_at11/117+1226821..1236455Phospholipase A-2-activating protein, putative, expressed
LOC_Os07g03170Os.56093.1.S1_at11/117+1238103..1238925expressed protein
LOC_Os07g03180Os.4624.1.S1_at11/117+1243744..1244547expressed protein
LOC_Os07g03190OsAffx.28242.1.S1_at11/117+1247236..1248366expressed protein
LOC_Os07g03200Os.12206.1.S1_at9/117+1253347..1253967Phytosulfokines 4 precursor, putative, expressed
LOC_Os07g03210OsAffx.28243.1.S1_at11/117+1258652..1263749hypothetical protein
LOC_Os07g03210OsAffx.22040.1.S1_x_at1/117+1258652..1263749hypothetical protein
LOC_Os07g03210OsAffx.23030.1.S1_s_at1/117+1258652..1263749hypothetical protein
LOC_Os07g03220OsAffx.28244.1.S1_at11/117+1266274..1266849bZIP transcription factor family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4624.1.S1_at--186--5951Chr07:1244122..1244146 (25 bp)
GAGAAGGGCGCCTGCTACAAGAAGC
LOC_Os07g03180
Os.4624.1.S1_at--487--4331Chr07:1244088..1244112 (25 bp)
GCCCGGAAAAGTGCTTCAAGTCCTT
LOC_Os07g03180
Os.4624.1.S1_at--654--4671Chr07:1244022..1244046 (25 bp)
GCGGGTGCAGCTTCGATTGCAACAA
LOC_Os07g03180
Os.4624.1.S1_at--450--6591Chr07:1244008..1244032 (25 bp)
GATTGCAACAAGTGCGAGGCCACCT
LOC_Os07g03180
Os.4624.1.S1_at--807--4611Chr07:1243995..1244019 (25 bp)
GCGAGGCCACCTGCTAATTAATCAA
LOC_Os07g03180
Os.4624.1.S1_at--804--9691Chr07:1243974..1243998 (25 bp)
TCAAACCGAATGATCCATGGATGGC
LOC_Os07g03180
Os.4624.1.S1_at--515--6231Chr07:1243955..1243979 (25 bp)
GATGGCGAAGAATCGATGGCCCTCT
LOC_Os07g03180
Os.4624.1.S1_at--206--6231Chr07:1243941..1243965 (25 bp)
GATGGCCCTCTCTACTGAAACTGAT
LOC_Os07g03180
Os.4624.1.S1_at--762--2251Chr07:1243828..1243852 (25 bp)
AAATATATTTTGGTGAGCTGCGAGA
LOC_Os07g03180
Os.4624.1.S1_at--929--1591Chr07:1243813..1243837 (25 bp)
AGCTGCGAGAGTCTGTAAGTATTCA
LOC_Os07g03180
Os.4624.1.S1_at--307--131Chr07:1243793..1243817 (25 bp)
ATTCAGGTGTGTGTGTGGTGTTCTT
LOC_Os07g03180
Target Sequence 
GAGAAGGGCGCCTGCTACAAGAAGCGGCTCACCTGCCCGGAAAAGTGCTTCAAGTCCTTCAGCTTCAAGGACAAGCACGG
CGGCGGCGGCGGCGGCGGCGGCGGGTGCAGCTTCGATTGCAACAAGTGCGAGGCCACCTGCTAATTAATCAAACCGAATG
ATCCATGGATGGCGAAGAATCGATGGCCCTCTCTACTGAAACTGATGGATGTGTATGGTATGGGGTGTTGAATTAATCGT
CAGTTATTAGAGTTTTGTTAATTAGCTACTTACTGAATGGAATGGAATGTAATGAAATATATTTTGGTGAGCTGCGAGAG
TCTGTAAGTATTCAGGTGTGTGTGTGGTGTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4624.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis