Browse Element(s) Details


Os.46294.1.S1_at

Description gb:NM_196289.1
DB_XREF= gi:37533937
TID=Os.46294.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46294 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0068A07.1), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0068A07.1), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2518010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g25130Os.3350.1.S2_a_at11/1110+12636473..12642866Alanine aminotransferase 2, putative, expressed
LOC_Os10g25130Os.3350.1.S1_at11/1110+12636473..12642866Alanine aminotransferase 2, putative, expressed
LOC_Os10g25130Os.3350.1.S1_a_at11/1110+12636473..12642866Alanine aminotransferase 2, putative, expressed
LOC_Os10g25140Os.12002.1.S1_a_at11/1110+12646015..12651092Alanine aminotransferase 2, putative, expressed
LOC_Os10g25150Os.12002.1.S2_at8/1110+12651629..12652123expressed protein
LOC_Os10g25160OsAffx.8167.2.S1_at11/1110+12657954..12658256hypothetical protein
LOC_Os10g25170Os.56665.1.A1_at11/1110+12660665..12662029AP2 domain containing protein, expressed
LOC_Os10g25180Os.46294.1.S1_at10/1110+12666644..12669510hypothetical protein
LOC_Os10g25190OsAffx.8166.1.S1_at4/1110+12671153..12671479transposon protein, putative, unclassified
LOC_Os10g25200Os.3343.1.S1_at11/1110+12674765..12682733expressed protein
LOC_Os10g25210Os.46689.1.S1_at11/1110+12684298..12686563F-box protein interaction domain containing protein, expressed
LOC_Os10g25220Os.46688.1.S1_x_at9/1110+12687132..12691819SAP domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007010biological_processcytoskeleton organization and biogenesis
GO:0009826biological_processunidimensional cell growth
GO:0009832biological_processcell wall biosynthesis (sensu Magnoliophyta)
GO:0005794cellular_componentGolgi apparatus
GO:0004439molecular_functionphosphoinositide 5-phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46294.1.S1_at--1043--3411Chr10:12667732..12667756 (25 bp)
CAGACTTTCTACATTGCCAACTTAC
LOC_Os10g25180
Os.46294.1.S1_at--574--2011Chr10:12667709..12667733 (25 bp)
ACTACAACATCGTTACCTGATCGCA
LOC_Os10g25180
Os.46294.1.S1_at--1159--6751NONE
GTTACCTGATCGCACTCTAAGGGAA
NONE
Os.46294.1.S1_at--408--6051Chr10:12667439..12667463 (25 bp)
GAGATACTGCCAATTGTGCTGCAAA
LOC_Os10g25180
Os.46294.1.S1_at--304--7651Chr10:12667413..12667437 (25 bp)
GGGAGTGCTCAAGACTAACTGCATA
LOC_Os10g25180
Os.46294.1.S1_at--336--9811Chr10:12667398..12667422 (25 bp)
TAACTGCATAGACAGCCGAGACCGC
LOC_Os10g25180
Os.46294.1.S1_at--1114--5351Chr10:12667283..12667307 (25 bp)
GAAGAGCCCTTGTCAAGCACCTTGA
LOC_Os10g25180
Os.46294.1.S1_at--234--5091Chr10:12667267..12667291 (25 bp)
GCACCTTGATGCTGTTCTATGAGGA
LOC_Os10g25180
Os.46294.1.S1_at--31--651Chr10:12667234..12667258 (25 bp)
ATGCATTGGCTCTTCAGTTTACTGG
LOC_Os10g25180
Os.46294.1.S1_at--312--1211Chr10:12667219..12667243 (25 bp)
AGTTTACTGGCTCTGCTGCTCAAAA
LOC_Os10g25180
Os.46294.1.S1_at--181--9011Chr10:12666908..12666932 (25 bp)
TGAATAAGCTGACCCGGAACATCCA
LOC_Os10g25180
Target Sequence 
CAGACTTTCTACATTGCCAACTTACTACAACATCGTTACCTGATCGCACTCTAAGGGAACAAAACGATGTTACCAGTGCA
AGTAGCAGTACTAGCATGAATGAACCCAAATTTGGGATAATAGAGATACTGCCAATTGTGCTGCAAAAGGGAGTGCTCAA
GACTAACTGCATAGACAGCCGAGACCGCACAAACAGAGCCCAAATTGTGGATGGACTAGTCGGCTTGGGGCGCCAGCTGA
AGGCATTGGTGCAGACTAAGGGTTTGGAGATTCATATAGAAGAGCCCTTGTCAAGCACCTTGATGCTGTTCTATGAGGAA
ATGGGGGATGCATTGGCTCTTCAGTTTACTGGCTCTGCTGCTCAAAACAAGGAGTTTTGGAAGCAAAAAGGGCAGTGGAG
TGCAATGAATAAGCTGACCCGGAACATCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46294.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis