Browse Element(s) Details


Os.46331.1.S1_s_at

Description gb:NM_197136.1
DB_XREF= gi:37535631
TID=Os.46331.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46331 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative receptor-like protein kinase (OSJNBa0051D19.27), mRNA.
PROD=putative receptor-like protein kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6604011/11receptor kinase, putative
LOC_Os10g3504011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65986Os.49295.1.S1_at11/111+38626848..38632491Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed
LOC_Os01g65992OsAffx.23931.1.S1_x_at11/111+38632673..38633575expressed protein
LOC_Os01g65992Os.55676.1.S1_at11/111+38632673..38633575expressed protein
LOC_Os01g66000OsAffx.23932.1.S1_at11/111+38633605..38634552expressed protein
LOC_Os01g66010Os.50896.1.S1_at11/111+38637437..38640480amino acid carrier, putative, expressed
LOC_Os01g66020OsAffx.11750.1.S1_at11/111+38645909..38648075Protein kinase domain containing protein, expressed
LOC_Os01g66030Os.429.1.S1_at11/111+38648187..38650919MADS-box transcription factor 2, putative, expressed
LOC_Os01g66030OsAffx.27979.1.S1_x_at1/111+38648187..38650919MADS-box transcription factor 2, putative, expressed
LOC_Os01g66040Os.46331.1.S1_s_at11/111+38651379..38652432receptor kinase, putative
LOC_Os01g66040OsAffx.11751.1.S1_at11/111+38651379..38652432receptor kinase, putative
LOC_Os01g66050Os.37409.1.S1_at11/111+38656028..38659444wound-responsive family protein, putative, expressed
LOC_Os01g66060OsAffx.11752.1.S1_at10/111+38663066..38664461hypothetical protein
LOC_Os01g66070OsAffx.23933.1.S1_at11/111+38671259..38671786PHD-finger family protein
LOC_Os01g66080OsAffx.22461.2.S1_x_at8/111+38673560..38676645retrotransposon protein, putative, unclassified
LOC_Os01g66080OsAffx.22461.3.S1_x_at5/111+38673560..38676645retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46331.1.S1_s_at--760--7192Chr10:18369967..18369991 (25 bp)
GTCGTCGAACGTGCTCGTCGTCTTC
LOC_Os10g35040
Os.46331.1.S1_s_at--685--9412Chr10:18369968..18369992 (25 bp)
TCGTCGAACGTGCTCGTCGTCTTCC
LOC_Os10g35040
Os.46331.1.S1_s_at--1004--7213Chr10:18369970..18369994 (25 bp)
GTCGAACGTGCTCGTCGTCTTCCCG
LOC_Os10g35040
Os.46331.1.S1_s_at--705--7312Chr10:18370175..18370199 (25 bp)
GTGCTGCTCGAGGTGGTCACCGGGA
LOC_Os10g35040
Os.46331.1.S1_s_at--665--4792Chr10:18370180..18370204 (25 bp)
GCTCGAGGTGGTCACCGGGAAGGTC
LOC_Os10g35040
Os.46331.1.S1_s_at--347--4172Chr10:18370307..18370331 (25 bp)
CGCCACGGCGACATGCTGAGGCTCA
LOC_Os10g35040
Os.46331.1.S1_s_at--303--1952Chr10:18370311..18370335 (25 bp)
ACGGCGACATGCTGAGGCTCACCGA
LOC_Os10g35040
Os.46331.1.S1_s_at--43--4612Chr10:18370314..18370338 (25 bp)
GCGACATGCTGAGGCTCACCGAGGT
LOC_Os10g35040
Os.46331.1.S1_s_at--214--2112Chr10:18370317..18370341 (25 bp)
ACATGCTGAGGCTCACCGAGGTCGC
LOC_Os10g35040
Os.46331.1.S1_s_at--1077--612Chr10:18370319..18370343 (25 bp)
ATGCTGAGGCTCACCGAGGTCGCCC
LOC_Os10g35040
Os.46331.1.S1_s_at--123--9132Chr10:18370320..18370344 (25 bp)
TGCTGAGGCTCACCGAGGTCGCCCT
LOC_Os10g35040
Target Sequence 
GTCGTCGAACGTGCTCGTCGTCTTCCCGGGGCCCGGCGGCCGCGGAGGCGGCGGCGGCGACGCGGTGCCGGTGGCCAAGC
TGACTGACCACGGGTTCCACCCGCTGCTGCCGCACCACGCGCACCGCCTCGCGGCGGCCAAGTGCCCGGAGCTCGCGCGC
GGGAGGCGGCGGCTCTCCTCCCGCGCCGACGTGTTCTGCCTCGGCCTCGTGCTGCTCGAGGTGGTCACCGGGAAGGTCCC
CGTCGACGAGGACGGCGACCTGGCGGAGTGGGCGCGGCTGGCGCTGAGCCACGAGTGGTCGACGGACATCCTCGACGTGG
AGATCGTCGCCGACCGGGGCCGCCACGGCGACATGCTGAGGCTCACCGAGGTCGCCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46331.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis