Browse Element(s) Details


Os.46339.1.S1_at

Description gb:CB678001
DB_XREF= gi:29681726
DB_XREF=OSJNEe15I05.f
CLONE=OSJNEe15I05
TID=Os.46339.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.46339 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_186924.1 (A.thaliana) putative protein phosphatase-2C
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2722011/11protein phosphatase 2c, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g27160NANA2+15981181..15984321retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g27170OsAffx.24448.1.S1_at11/112+15987487..15988863hypothetical protein
LOC_Os02g27180NANA2+15989770..15990517hypothetical protein
LOC_Os02g27190NANA2+15994843..15995706hypothetical protein
LOC_Os02g27200Os.27363.1.S1_at11/112+15996166..15999155FAD binding domain containing protein, expressed
LOC_Os02g27210OsAffx.24449.1.S1_at11/112+16000553..16003428expressed protein
LOC_Os02g27210Os.54723.1.S1_at2/112+16000553..16003428expressed protein
LOC_Os02g27210Os.26894.1.A1_x_at1/112+16000553..16003428expressed protein
LOC_Os02g27210OsAffx.20993.1.S1_at1/112+16000553..16003428expressed protein
LOC_Os02g27220Os.46339.1.S1_at11/112+16003639..16008412protein phosphatase 2c, putative, expressed
LOC_Os02g27220Os.9705.1.S1_at11/112+16003639..16008412protein phosphatase 2c, putative, expressed
LOC_Os02g27230NANA2+16015719..16021663retrotransposon protein, putative, unclassified
LOC_Os02g27240Os.28943.1.S1_x_at2/112+16022284..16024758retrotransposon protein, putative, unclassified
LOC_Os02g27250NANA2+16028774..16029229hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46339.1.S1_at--536--7591Chr02:16006752..16006776 (25 bp)
GGGCAGGAATTACACCCGTTGCTTC
LOC_Os02g27220
Os.46339.1.S1_at--234--3131Chr02:16006745..16006769 (25 bp)
AATTACACCCGTTGCTTCTGCTTAG
LOC_Os02g27220
Os.46339.1.S1_at--602--4911Chr02:16006732..16006756 (25 bp)
GCTTCTGCTTAGTACCATCAATTCT
LOC_Os02g27220
Os.46339.1.S1_at--397--3152Chr03:25924961..25924980 (20 bp)
AATTCTAAATTCTTCCTTGGCATGC
NONE
Os.46339.1.S1_at--333--9851Chr02:16006708..16006732 (25 bp)
TAAATTCTTCCTTGGCATGCCACAT
LOC_Os02g27220
Os.46339.1.S1_at--800--8271Chr02:16006695..16006719 (25 bp)
GGCATGCCACATACTTTTAGGAAAT
LOC_Os02g27220
Os.46339.1.S1_at--75--3111Chr02:16006667..16006691 (25 bp)
AATATCAGTTTCTAATTTCACACTA
LOC_Os02g27220
Os.46339.1.S1_at--1053--3131Chr02:16006643..16006667 (25 bp)
AATTACCAATCTCCTGTATCCTTTT
LOC_Os02g27220
Os.46339.1.S1_at--541--451Chr02:16006635..16006659 (25 bp)
ATCTCCTGTATCCTTTTTAATCAAC
LOC_Os02g27220
Os.46339.1.S1_at--240--7511Chr02:16006590..16006614 (25 bp)
GTGGTTCTTATGTACCTATGGAGGA
LOC_Os02g27220
Os.46339.1.S1_at--190--2411Chr02:16006552..16006576 (25 bp)
AAACAGATATTTCTATTGGGTACAG
LOC_Os02g27220
Target Sequence 
GGGCAGGAATTACACCCGTTGCTTCTGCTTAGTACCATCAATTCTAAATTCTTCCTTGGCATGCCACATACTTTTAGGAA
ATGATAATATCAGTTTCTAATTTCACACTAATTACCAATCTCCTGTATCCTTTTTAATCAACAGTTTACGATGTAAATTT
TTGTGGTTCTTATGTACCTATGGAGGATATGATTTATACTAAACAGATATTTCTATTGGGTACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46339.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis