Browse Element(s) Details


Os.4635.1.S1_at

Description gb:AK061595.1
DB_XREF= gi:32971613
TID=Os.4635.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.4635 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-023-G05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-023-G05, full insert sequence.
FL= gb:AK061595.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2559011/11Tsi1-interacting protein TSIP1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g25560Os.53342.1.S1_at11/119+15331959..15337794integral membrane transporter family protein, putative, expressed
LOC_Os09g25570Os.47386.1.S1_at10/119+15343636..15346098Eukaryotic aspartyl protease family protein, expressed
LOC_Os09g25580Os.11912.1.S1_at11/119+15348087..15354532MGDG synthase type A, putative, expressed
LOC_Os09g25590Os.4635.1.S1_at11/119+15357372..15359696Tsi1-interacting protein TSIP1, putative, expressed
LOC_Os09g25600NANA9+15363890..15368113ovule development protein, putative
LOC_Os09g25610Os.55078.1.S1_at11/119+15380631..15383390glutamine amidotransferase class-I family protein, expressed
LOC_Os09g25620Os.11412.1.S1_a_at11/119+15384605..15388095S-adenosylmethionine decarboxylase proenzyme, putative, expressed
LOC_Os09g25620Os.12170.1.S1_at1/119+15384605..15388095S-adenosylmethionine decarboxylase proenzyme, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4635.1.S1_at--648--3731Chr09:15358979..15359003 (25 bp)
CTAACCCATGTTCATCTTGTCAATC
LOC_Os09g25590
Os.4635.1.S1_at--555--8731Chr09:15358996..15359020 (25 bp)
TGTCAATCTGCTGGGCACGTGGAGT
LOC_Os09g25590
Os.4635.1.S1_at--686--7691Chr09:15359027..15359051 (25 bp)
GGTGTACCGGCACAGGTTTCTTTAT
LOC_Os09g25590
Os.4635.1.S1_at--993--6831Chr09:15359042..15359066 (25 bp)
GTTTCTTTATCCTCGGCAACAACAT
LOC_Os09g25590
Os.4635.1.S1_at--1118--2491Chr09:15359062..15359086 (25 bp)
AACATGTTGTGTGAAGTACCCTCAA
LOC_Os09g25590
Os.4635.1.S1_at--927--8831Chr09:15359102..15359308 (25 bp)
TGATATGCTCTGGAAAGGGCTTCGC
LOC_Os09g25590
Os.4635.1.S1_at--1028--2871Chr09:15359299..15359322 (24 bp)
AAGGGCTTCGCAACTTGTGCTGATT
LOC_Os09g25590
Os.4635.1.S1_at--411--2531Chr09:15359330..15359354 (25 bp)
AACTGGGTTTCGTGCCAAGTGGCTT
LOC_Os09g25590
Os.4635.1.S1_at--918--2871Chr09:15359346..15359370 (25 bp)
AAGTGGCTTGAGGATCCTCCTGTCG
LOC_Os09g25590
Os.4635.1.S1_at--375--9471Chr09:15359447..15359471 (25 bp)
TCTGTTCATATTCCTCTGTACGTAC
LOC_Os09g25590
Os.4635.1.S1_at--934--6511Chr09:15359484..15359508 (25 bp)
GATATTTTTGCACTGCCTCAGCTAT
LOC_Os09g25590
Target Sequence 
CTAACCCATGTTCATCTTGTCAATCTGCTGGGCACGTGGAGTNNAAGTGGTGTACCGGCACAGGTTTCTTTATCCTCGGC
AACAACATGTTGTGTGAAGTACCCTCAAAAAACACGAAATGTGTGATATGCTCTGGAAAGGGCTTCGCAACTTGTGCTGA
TTGCAAAGGAACTGGGTTTCGTGCCAAGTGGCTTGAGGATCCTCCTGTCGACAAATGAAGCAGAGGAAGTTTACCATACC
GTAAAACTTTTCTAGTTAAAATTAATCTTTGCTAATTGTATGTACATCTGTTCATATTCCTCTGTACGTACAAGTGGTAC
TATGATATTTTTGCACTGCCTCAGCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4635.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis