Browse Element(s) Details


Os.46392.1.S1_s_at

Description gb:CF293601
DB_XREF= gi:33662634
DB_XREF=30DGS--02-N14.b1
CLONE=30DGS--02-N14
TID=Os.46392.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.46392 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2530011/11expressed protein
LOC_Os10g0529011/11tRNA/rRNA methyltransferase, putative, expressed
LOC_Os07g403908/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g25270OsAffx.20387.1.S1_x_at11/1110+12727647..12728284retrotransposon protein, putative, unclassified
LOC_Os10g25280NANA10+12728537..12731704retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g25290Os.12012.1.S1_at11/1110+12738382..12739510ZIM motif family protein, expressed
LOC_Os10g25300Os.46392.1.S1_s_at11/1110+12749285..12752443expressed protein
LOC_Os10g25300Os.40388.1.S1_at9/1110+12749285..12752443expressed protein
LOC_Os10g25300Os.40388.2.S1_x_at8/1110+12749285..12752443expressed protein
LOC_Os10g25300Os.40388.2.S1_s_at3/1110+12749285..12752443expressed protein
LOC_Os10g25300Os.4648.1.S1_at1/1110+12749285..12752443expressed protein
LOC_Os10g25300OsAffx.19167.1.A1_at1/1110+12749285..12752443expressed protein
LOC_Os10g25310Os.46838.1.S1_at10/1110+12757461..12760085SPX domain containing protein, expressed
LOC_Os10g25320Os.17550.1.S1_at11/1110+12759672..12765320Initiation factor 2 subunit family protein, expressed
LOC_Os10g25320Os.17550.2.S1_x_at11/1110+12759672..12765320Initiation factor 2 subunit family protein, expressed
LOC_Os10g25320Os.56122.1.S1_at11/1110+12759672..12765320Initiation factor 2 subunit family protein, expressed
LOC_Os10g25320Os.22711.1.A1_at1/1110+12759672..12765320Initiation factor 2 subunit family protein, expressed
LOC_Os10g25330OsAffx.30527.1.S1_at11/1110+12769577..12770105hypothetical protein
LOC_Os10g25340OsAffx.30528.1.S1_at10/1110+12773386..12777053GDSL-like Lipase/Acylhydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006396biological_processRNA processing
GO:0003723molecular_functionRNA binding
GO:0008173molecular_functionRNA methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46392.1.S1_s_at--579--2053Chr10:2599407..2599431 (25 bp)
ACTTGTTCCAGGTATAGTTCCAGGT
LOC_Os10g05290
Os.46392.1.S1_s_at--54--3613Chr10:2599408..2599432 (25 bp)
CTTGTTCCAGGTATAGTTCCAGGTG
LOC_Os10g05290
Os.46392.1.S1_s_at--952--9753Chr10:2599550..2599574 (25 bp)
TAATGCATGGCGGATAAATGATTGC
LOC_Os10g05290
Os.46392.1.S1_s_at--521--8353Chr10:2599558..2599582 (25 bp)
GGCGGATAAATGATTGCAACTTGCA
LOC_Os10g05290
Os.46392.1.S1_s_at--207--3272Chr10:2599574..2599598 (25 bp)
CAACTTGCAAGGCAGCATGTTAAAC
LOC_Os10g05290
Os.46392.1.S1_s_at--573--8792Chr10:2599591..2599615 (25 bp)
TGTTAAACATGCACAGCTCTCTCTT
LOC_Os10g05290
Os.46392.1.S1_s_at--701--10492Chr10:2599593..2599617 (25 bp)
TTAAACATGCACAGCTCTCTCTTGC
LOC_Os10g05290
Os.46392.1.S1_s_at--197--2413Chr10:2599595..2599619 (25 bp)
AAACATGCACAGCTCTCTCTTGCCT
LOC_Os10g05290
Os.46392.1.S1_s_at--664--10553Chr10:2599626..2599650 (25 bp)
TTCTTGGACTAGGAGATGTGTTTAC
LOC_Os10g05290
Os.46392.1.S1_s_at--751--10653Chr10:2599741..2599765 (25 bp)
TTCCTATCTTAATTCCATCGGTTGG
LOC_Os10g05290
Os.46392.1.S1_s_at--23--9573Chr10:2599747..2599771 (25 bp)
TCTTAATTCCATCGGTTGGCTAGCT
LOC_Os10g05290
Target Sequence 
ACTTGTTCCAGGTATAGTTCCAGGTGCTCCGTGCTCGTCAGGGCTGAAAGAGATTACAGATCTTATTTGGTGATTCGCAG
NNNTNNTNNNNTNNNNNNCANTNNTGNNNNNNNNNNNNNNNNNNNNANNNNNNNNNNNCNAAATAATGCATGGCGGATAA
ATGATTGCAACTTGCAAGGCAGCATGTTAAACATGCACAGCTCTCTCTTGCCTAGGAAATTCTTGGACTAGGAGATGTGT
TTACGTTGCAGTTGGCACATGCGTTCAGTTGTCAACGCTCCTAAACTCTTCACCTTTCGTATGGATCAAATGAAGGATTG
AAAATATGTGACTCTTCCTATCTTAATTCCATCGGTTGGCTAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46392.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis